Pinned Repositories
accession-commons
Generic library for accessioning any type of object
RADmapper
Set of scripts to create denovo consensus and map the read back
tcezard's Repositories
tcezard/accession-commons
Generic library for accessioning any type of object
tcezard/bioconda-recipes
Conda recipes for the bioconda channel.
tcezard/biovalidator
JSON validator derived from AJV supporting ontology and taxonomy validation.
tcezard/contig-alias
Service to provide synonyms of chromosome/contig identifiers
tcezard/contig_name_converter
Convert between contig name convention of the same assembly
tcezard/covid19dp-submission
Covid-19 data portal submissions
tcezard/eva-accession
EVA non-human variant accessioning service
tcezard/eva-assembly-ingestion
Automation for ingesting a new assembly for a species
tcezard/eva-common-pyutils
EBI EVA - Common Python Utilities
tcezard/eva-ebi-search-export
Scripts to export EVA data and metadata to EBI search
tcezard/eva-internal-pyutils
Python utilities used for internal EVA processes
tcezard/eva-opentargets
Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets
tcezard/eva-pipeline
Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch
tcezard/eva-seqcol
Java implementation of the sequence collection specification to represent INSDC assemblies
tcezard/eva-sub-cli
EVA Submission Command Line Interface for Validation
tcezard/eva-submission
Components that connect and automate main tasks in the EVA workflow
tcezard/eva-submission-ws
Web services for EVA Submissions
tcezard/eva-tasks
Code used to to perform tasks or one of analysis.
tcezard/eva-tools
Tools compatible with the infrastructure of the European Variation Archive pipeline
tcezard/eva-vcf-merge
Tool for merging large sets of VCF files
tcezard/eva-web
Web front-end for the European Variation Archive
tcezard/eva-ws
European Variation Archive REST web services API
tcezard/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
tcezard/reverse-lookup-spec
This is the temporary, unofficial home for the Reverse Lookup draft specification
tcezard/seqcol-spec
Website for DRAFT specification docs for GA4GH Sequence Collections.
tcezard/seqcolapi
tcezard/TASC
TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
tcezard/variant-remapping
The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.
tcezard/vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
tcezard/web-prototype
Prototypes for new website components in React