Pinned Repositories
ATAC-seq2
benchmark
identity transposon insert methods benchmark
glioma_singlecell_Project
htslib
C library for high-throughput sequencing data formats
learnopencv
Learn OpenCV : C++ and Python Examples
PSICHIC
PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence data
Rstringtie
Transcriptome sequencing assembly
TEi
Identification of transposon insertion sites
TumorEpi
Neoantigen analysis of Lewis lung cancer in mice
wdl
Workflow Description Language - Specification and Implementations
tchen-tt's Repositories
tchen-tt/PSICHIC
PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence data
tchen-tt/TEi
Identification of transposon insertion sites
tchen-tt/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
tchen-tt/awesome-deep-learning-single-cell-papers
tchen-tt/benchmark
identity transposon insert methods benchmark
tchen-tt/Rstringtie
Transcriptome sequencing assembly
tchen-tt/aquarel
Styling matplotlib made easy
tchen-tt/AttSiOff
tchen-tt/BIND
Leveraging protein-language models for virtual screening
tchen-tt/caffe
Caffe: a fast open framework for deep learning.
tchen-tt/CellSpace
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
tchen-tt/celltypist
A tool for semi-automatic cell type classification, harmonization and integration
tchen-tt/CMasher
Scientific colormaps for making accessible, informative and 'cmashing' plots
tchen-tt/DeepSTF
DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
tchen-tt/DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
tchen-tt/Machine-Learning-is-ALL-You-Need
🔥🌟《Machine Learning 格物志》: ML + DL + RL basic codes and notes by sklearn, PyTorch, TensorFlow, Keras & the most important, from scratch!💪 This repository is ALL You Need!
tchen-tt/NeuronMotif
NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
tchen-tt/OligoFormer
tchen-tt/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
tchen-tt/Palantir
Single cell trajectory detection
tchen-tt/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
tchen-tt/patchworklib
Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
tchen-tt/Pocket2Mol
Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets
tchen-tt/rdkit
The official sources for the RDKit library
tchen-tt/scalop
Single Cell Analysis Operations
tchen-tt/SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
tchen-tt/SingleCell
R package of integrated analysis of single cell data
tchen-tt/tfmodisco
TF MOtif Discovery from Importance SCOres
tchen-tt/transformer
Transformer: PyTorch Implementation of "Attention Is All You Need"
tchen-tt/Umol
Protein-ligand structure prediction