tdayris-perso

Bioinformatician

Gustave Roussy Institute

Pinned Repositories

bam-msisensor
Detect replication slippage variants at microsatellite regions
Language:Python1 1 00
infer-sequencing-libraries
From a given (pair?) of FastQ files for a given sample, infer its strandiness, and other parameters
Language:Python0 1 00
ngs-cleaning
Trimming and QC on NGS data
Language:Python0 1 05
rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls
Language:Python1 2 80
rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
Language:Python2 1 13
sequana
Sequana: a set of Snakemake NGS pipelines
Language:Jupyter Notebook0 0 00
slurm
Cookiecutter for snakemake slurm profile
Language:Python0 0 00
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Pep80 0 00
vcf-annotate-snpeff-snpsift
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Language:Python2 1 02
wes-mapping-bwa-gatk
Map and post-process your bams for SNP calling
Language:Python2 1 01

tdayris-perso/rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
Language:Python2 1 13
tdayris-perso/vcf-annotate-snpeff-snpsift
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Language:Python2 1 02
tdayris-perso/wes-mapping-bwa-gatk
Map and post-process your bams for SNP calling
Language:Python2 1 01
tdayris-perso/bam-msisensor
Detect replication slippage variants at microsatellite regions
Language:Python1 1 00
tdayris-perso/rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls
Language:Python1 2 80
tdayris-perso/infer-sequencing-libraries
From a given (pair?) of FastQ files for a given sample, infer its strandiness, and other parameters
Language:Python0 1 00
tdayris-perso/ngs-cleaning
Trimming and QC on NGS data
Language:Python0 1 05
tdayris-perso/sequana
Sequana: a set of Snakemake NGS pipelines
Language:Jupyter Notebook0 0 00
tdayris-perso/slurm
Cookiecutter for snakemake slurm profile
Language:Python0 0 00
tdayris-perso/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Pep80 0 00