/FAIR_smk

Primary LanguagePythonOtherNOASSERTION

IFB FAIR bioinfo training - SnakeMake workflow

Use during the IFB FAIR bioinfo training

Dataset

DOI

wget -O FAIR_Bioinfo_data.tar.gz https://zenodo.org/record/3997237/files/FAIR_Bioinfo_data.tar.gz?download=1

Exercices

ex1_o8 - Integrated Package Management

Snakemake documentation: Integrated Package Management

--use-conda

module load snakemake slurm-drmaa conda
snakemake --drmaa --jobs=4 -s ex1_o8.smk --use-conda

--use-singularity

module load snakemake slurm-drmaa singularity
snakemake --drmaa --jobs=4 -s ex1_o8.smk --use-singularity

--use-envmodule

module load snakemake slurm-drmaa 
snakemake --drmaa --jobs=4 -s ex1_o8.smk --use-envmodule