Pinned Repositories
bigr_epicure_pipeline
Snakemake pipeline for Epicure analyses
bigr_templates
Several templates for Open-on-demand and procedures
cel-cnv-eacon
Perform Cytoscans/Oncoscans CNV analysis with EaCoN
fair_bowtie2_mapping
Align reads over a reference genome, filter aligned-reads, and mark duplicates
fair_fastqc_multiqc
Perform basic QC over sequenced data
fair_gatk_mutect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
fair_genome_indexer
Download and index Ensembl sequences and annotations
fair_macs2_calling
Snakemake workflow used to call peaks with Macs2
fair_rnaseq_salmon_quant
Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
tdayris's Repositories
tdayris/projects
These are my snakefiles for each projects
tdayris/yawn
A bunch of scripts for actions I have to do on a regular basis