Pinned Repositories
cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
fidder
Detect and erase gold fiducials in cryo-EM images
imodmodel
IMOD model files as pandas dataframes in Python
libtilt
Image processing for cryo-electron microscopy in PyTorch
lil-aretomo
A lightweight Python API for AreTomo
mdocfile
SerialEM mdoc files as pandas dataframes
membrain-seg
membrane segmentation in 3D for cryo-ET
mmdf
macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames
starfile
STAR file I/O in Python
teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
teamtomo's Repositories
teamtomo/membrain-seg
membrane segmentation in 3D for cryo-ET
teamtomo/starfile
STAR file I/O in Python
teamtomo/teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
teamtomo/libtilt
Image processing for cryo-electron microscopy in PyTorch
teamtomo/fidder
Detect and erase gold fiducials in cryo-EM images
teamtomo/imodmodel
IMOD model files as pandas dataframes in Python
teamtomo/mdocfile
SerialEM mdoc files as pandas dataframes
teamtomo/mmdf
macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames
teamtomo/cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
teamtomo/lil-aretomo
A lightweight Python API for AreTomo
teamtomo/yet-another-imod-wrapper
Simple API for automated tilt-series alignment in IMOD
teamtomo/dynamotable
Dynamo table files in Python as pandas dataframes
teamtomo/cryoeraser
Erase features from cryo-EM images in Python
teamtomo/cryotypes
Super-simple data structures for cryo-electron tomography data
teamtomo/cryo-et-sample-data
teamtomo/emfile
Basic utility to read tomography data from files in *.em format.
teamtomo/qvox
Quantized Voxel Array Operations
teamtomo/.github
teamtomo/docs-template
documentation template for teamtomo packages
teamtomo/ttmask
Mask creation CLI tool for cryo-EM/ET