Pinned Repositories
Autosomal-DNA-Converter
Conversion between the raw Autosomal DNA data from FTDNA, 23andMe, Ancestry and deCODEme formats.
BAM-Analysis-Kit
extract23
Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file
karyo_RxRy
Script for sex identification and aneuploidy detection using ancient DNA.
sequenceTools
teepean's Repositories
teepean/BAM-Analysis-Kit
teepean/karyo_RxRy
Script for sex identification and aneuploidy detection using ancient DNA.
teepean/sequenceTools
teepean/adna_to_dataset
teepean/aDNApipeline
teepean/aDNApipeline_parabricks
teepean/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
teepean/bwa-mem2
The next version of bwa-mem
teepean/cgatools
Porting Complete Genomics Analysis Tools 1.8.0 (2013) from BOOST_FILESYSTEM_VERSION v2 (deprecated in 1.48.0, 2011) to v3
teepean/clade-finder
Determines Y-Haplogroup Clade From Positive and Negative SNPs
teepean/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
teepean/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
teepean/Harjoitus-pull-request
Harjoittelemme Githubia
teepean/hisat2
Graph-based alignment (Hierarchical Graph FM index)
teepean/isa-l
Intelligent Storage Acceleration Library
teepean/leeHom
Bayesian reconstruction of ancient DNA fragments
teepean/MagiskOnWSA
Integrate Magisk root and Google Apps (OpenGApps) into WSA (Windows Subsystem for Android)
teepean/MagiskOnWSA-1
teepean/MINGW-packages
Package scripts for MinGW-w64 targets to build under MSYS2.
teepean/mm2-fast
Accelerated version of minimap2; up to 1.8x faster
teepean/ont_minimap2
teepean/PaddleOCR
Awesome multilingual OCR toolkits based on PaddlePaddle （practical ultra lightweight OCR system, support 80+ languages recognition, provide data annotation and synthesis tools, support training and deployment among server, mobile, embedded and IoT devices）
teepean/pcem
PCem
teepean/PLINK-to-23andMe
Recodes all the individuals in PLINK bed to 23andMe compatible files
teepean/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
teepean/snipsa
Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups.
teepean/snps
tools for reading, writing, merging, and remapping SNPs
teepean/strobealign
Aligns short reads using dynamic seed size with strobemers
teepean/Yleaf
Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
teepean/youtube-dl
Command-line program to download videos from YouTube.com and other video sites