Pinned Repositories
amplicon
API-testing
test script and data for MG-RAST API tests
autoskewer
Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.
AWE
workflow and resource management system for bioinformatics data analysis
awe_service
The awe_service repository provides KBase release engineering tools for the deployment of the AWE client and server. The AWE repository is included as a submodule in the awe_service repository and is maintained at http://github.com/MG-RAST/AWE.
communities_api
DRISEE
duplicate read inferred sequencing error estimator
ipy-mkmq
IPython Tools for analysis in MG-RAST KBase MatR QIIME
MG-RAST
metagenomic analysis server site code
pipeline
metagenomic analysis server pipeline scripts
teharrison's Repositories
teharrison/MG-RAST
metagenomic analysis server site code
teharrison/pipeline
metagenomic analysis server pipeline scripts
teharrison/amplicon
teharrison/API-testing
test script and data for MG-RAST API tests
teharrison/autoskewer
Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.
teharrison/AWE
workflow and resource management system for bioinformatics data analysis
teharrison/awe_service
The awe_service repository provides KBase release engineering tools for the deployment of the AWE client and server. The AWE repository is included as a submodule in the awe_service repository and is maintained at http://github.com/MG-RAST/AWE.
teharrison/communities_api
teharrison/dev_container
This repository is a container for developing and deploying KBase modules. To use this, you must already have a "runtime" directory, which contains the neccesary binaries and libraries. For an idea of what is expected to be in this runtime, consult the [bootstrap repository](https://git.kbase.us/bootstrap.git/).
teharrison/ebi-submitter
Tools for submitting public MG-RAST jobs to the EBI's ENA archive
teharrison/go-shock-client
go client library for Shock
teharrison/golib
teharrison/ipython3
Fork of IPython 3 (dev)
teharrison/MG-RAST-analysis
module to deploy IPython in the MG-RAST / KBase enviroment
teharrison/MG-RAST-exporter
teharrison/MG-RAST-Tools
Repository of script tools, examples, and contributed code for using the MG-RAST API
teharrison/MG-RASTv4
next generation metagenome analysis
teharrison/mgrast_pipeline
teharrison/mixs
“Minimum Information about any (X) Sequence” (MIxS) specification
teharrison/narrative
teharrison/narrative_job_service
teharrison/narrative_method_specs
teharrison/narrative_method_specs_sandbox
Sandbox for experimenting with narrative method specs.
teharrison/narrative_method_store
teharrison/OpenStackMaster
Perl script and modules for the instantiation of, configuration of and communication with multiple VMs in an Openstack environment
teharrison/Retina
teharrison/Shock
teharrison/skewer
teharrison/Skyport
dockerfiles, app-definitions and scripts to upload images to Shock
teharrison/tech-report