utilities for dealing with bruker nmr/mri systems and data
To use these utilities, run the script brukitchen_setup.m to compile the mex programs from within Matlab, then add the matlab directory to your path:
Requires a system with a C++11-capable compiler.
>> cd .../path/to/BruKitchen/matlab
>> brukitchen_setup
>> addpath(['.../path/to/BruKitchen/matlab']);
% then read an experiment directory:
>> ex = read_bru_experiment('/opt/data/.../myexperiment')
ex =
struct with fields:
acqu: [1×1 struct]
acqus: [1×1 struct]
acqp: [1×1 struct]
method: [1×1 struct]
pdata: [1×1 containers.Map]
fid: [2048×1 double]
>> ex.acqus.SW_h
ans =
5000
| Files | |
|---|---|
| read_bru_experiment | Read all the files and data from an experiment |
| mexldr.cpp | Read a single jcamp-dx parameter file |
Build the python modules in-place.
rm jcampdx.so
python setup.py build_ext --inplace
| File | |
|---|---|
| BruKitchen.py | utility functions for controlling the spectrometer |
| PvCmd.py | classes for wrapping control of ParaVision |
| pvshell.py | a command-line shell for controlling ParaVision |
| procall.py | example of how to process a series of PV experiments |