tetedange13

tetedange13's Stars

• mobidic/Captain-ACHAB

  Analysis Converter for Human who might Abhor Bioinformatics. A simple and useful interface to analysis of WES data for molecular diagnosis

  Language:Perl62

• mobidic/MobiDL

  MobidicWDL workflows

  Language:WDL53

• nf-core/raredisease

  Call and score variants from WGS/WES of rare disease patients.

  Language:Nextflow7535

• Clinical-Genomics/MIP

  Mutation Identification Pipeline. Read the latest documentation:

  Language:Perl4110

• BimberLab/DISCVRSeq

  A collection of command line tools for working with sequencing data

  Language:HTML4815

• askimed/nf-test

  Simple test framework for Nextflow pipelines

  Language:Java12817

• brentp/somalier

  fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

  Language:Nim25435

• LUMC/pytest-workflow

  Configure workflow/pipeline tests using yaml files.

  Language:Python639

• chanzuckerberg/miniwdl

  Workflow Description Language developer tools & local runner

  Language:Python16951

• BU-ISCIII/qc_exome_tools

  Language:Python32

• chriskiehl/GooeyExamples

  Example programs to Demonstrate Gooey's functionality

  30473

• chriskiehl/Gooey

  Turn (almost) any Python command line program into a full GUI application with one line

  Language:Python20.5k1k

• MDU-PHL/bohra

  A pipeline for bioinformatics analysis of bacterial genomes

  Language:Nextflow133

• nf-core/viralrecon

  Assembly and intrahost/low-frequency variant calling for viral samples

  Language:Nextflow111104

• ryanlayer/ssshtest

  Stupid Simple (ba)Sh Testing - A functional software testing framwork

  Language:Shell233

• dridk/PyVCF3

  A Variant Call Format reader for Python.

  Language:Python507

• etal/cnvkit

  Copy number variant detection from targeted DNA sequencing

  Language:Python502162

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.2k157

• shenwei356/csvtk

  A cross-platform, efficient and practical CSV/TSV toolkit in Golang

  Language:Go98185

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim67099

• ibraheemdev/modern-unix

  A collection of modern/faster/saner alternatives to common unix commands.

  30.3k768

• labsquare/cutevariant

  A standalone and free application to explore genetics variations from VCF file

  Language:Python10220

• zazuum/xlsxgrep

  xlsxgrep is a CLI tool to search text in XLSX, XLS, CSV, TSV and ODS files. It works similarly to Unix/GNU Linux grep.

  Language:Python354

• tbersez/Allmine

  AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :

  Language:Python4