teyden
I like to apply molecular biology knowledge to develop software for managing biological and medical data.
BenchSciVancouver, BC
Pinned Repositories
phenotips
The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients with possible genetic disorders through an easy-to-use Web interface
artsfordementia
dementiaHack Toronto 2017
genome-plots
Plotting tools + SNP analysis module of .VCF files, 23andme raw data, ideograms, and more.
neuroModelling
Computational neural modelling in MATLAB
relation-extraction
Extracts relations from text.
sciPlots
Plotting tools for epidemiological and enzyme kinetic modeling using ode solver and Plot.ly
textAnalysis
Text filtering and curation in Ruby
udp-neuroimaging
Custom neuroradiology section for the PT patient form, with conditions divided into sections. Row for each condition, column for each visit date. Rows map to HPO terms.
variant-store
A Java library that wraps the complexity of storing and querying large numbers of genomic variants
teyden's Repositories
teyden/artsfordementia
dementiaHack Toronto 2017
teyden/textAnalysis
Text filtering and curation in Ruby
teyden/genome-plots
Plotting tools + SNP analysis module of .VCF files, 23andme raw data, ideograms, and more.
teyden/neuroModelling
Computational neural modelling in MATLAB
teyden/sciPlots
Plotting tools for epidemiological and enzyme kinetic modeling using ode solver and Plot.ly
teyden/udp-neuroimaging
Custom neuroradiology section for the PT patient form, with conditions divided into sections. Row for each condition, column for each visit date. Rows map to HPO terms.
teyden/variant-store
A Java library that wraps the complexity of storing and querying large numbers of genomic variants
teyden/asthma-research
teyden/bioinf
DNAwebapp + sequence & SNP analysis
teyden/catalogapp
teyden/chic
Commercial Website
teyden/crea-relation-filterer
A filtering tool for relations extracted from NLP
teyden/CREA-Web-App
Interactive visualization for relations extracted by NLP of biological article abstracts found on PubMed.
teyden/cs246-OOS
Winter 2015 | bash & c++
teyden/CVST
:exclamation: This is a read-only mirror of the CRAN R package repository. CVST — Fast Cross-Validation via Sequential Testing
teyden/DNAwebapp_old
>> contents moved to bioinf / DNAwebapp
teyden/experimental-biology-2015
Submission for the experimental biology conference in Boston.
teyden/hfe
Hierarchical Feature Engineering for Microbiota (16S rRNA profiles), as provided by OTU tables of relative abundances.
teyden/hodgkin-huxley
python + MATLAB: HH model of action potential
teyden/llist
Python 101: linked lists
teyden/MiRKC
This is a fork of MiRKAT — Microbiome Regression-Based Kernel Association Test.
teyden/miscellaneous
School stuff and coder challenges
teyden/phenotips
PhenoTips provides an easy-to-use Web interface and standardized database back-end for collecting clinical findings observed in patients with possible genetic disorders.
teyden/phenotips-niaid
teyden/pyHSICLasso
Versatile Nonlinear Feature Selection Algorithm for High-dimensional Data
teyden/sparseDOSSA_x
teyden/strings
Python 101: string commands
teyden/teyden.github.io
teyden/teyden.me
teyden/webmain