Pinned Repositories
alibaseq
Alignment-Based Sequence extraction
bam-manipulator
Easily perform various operations on BAM files
BaseCaller
Cas12a
Scripts for: "Optimization of AsCas12a for combinatorial genetic screens in human cells"
DownloadHGDP
Simple repository to download and collate WGS data for several hundred HGDP samples from the ENA
HipSTR
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
MUTEA
Python package to simulate and estimate Y-STR mutation models
PhasedBEAGLE
Version of BEAGLE capable of outputting phased genotype probabilities
read-stitcher
Efficiently merge overlapping paired-end reads using suffix trees
ystr-mut-rates
Data for Y-STR mutation rate paper
tfwillems's Repositories
tfwillems/HipSTR
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
tfwillems/MUTEA
Python package to simulate and estimate Y-STR mutation models
tfwillems/PhasedBEAGLE
Version of BEAGLE capable of outputting phased genotype probabilities
tfwillems/ystr-mut-rates
Data for Y-STR mutation rate paper
tfwillems/read-stitcher
Efficiently merge overlapping paired-end reads using suffix trees
tfwillems/alibaseq
Alignment-Based Sequence extraction
tfwillems/bam-manipulator
Easily perform various operations on BAM files
tfwillems/BaseCaller
tfwillems/Cas12a
Scripts for: "Optimization of AsCas12a for combinatorial genetic screens in human cells"
tfwillems/DownloadHGDP
Simple repository to download and collate WGS data for several hundred HGDP samples from the ENA
tfwillems/EMContaminator
Infer contamination fraction in sequencing data using an EM algorithm
tfwillems/fusion_twas
methods for functional summary-based imputation
tfwillems/gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
tfwillems/kmer-counter
Rapidly counter kmers in FASTA or FASTQ files
tfwillems/pandera
A light-weight, flexible, and expressive data validation library for dataframes
tfwillems/pysam-fix-type-hints
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
tfwillems/STRValidator