tgstoecker
Software Dev. & Data Scientist. Currently finishing Ph.D. in Bioinformatics. I love tea + coding in the late hours of the night. (and also cats)
University of BonnBonn, Germany
Pinned Repositories
A2TEA.WebApp
R Shiny web application for the inspection, filtering & analysis of results generated by the A2TEA pipeline
A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
advanced-shiny
🤹 Shiny tips & tricks for improving your apps and solving common problems
AHRD_Snakemake
Snakemake wrapper for AHRD
april_tyll_blog
April and Tyll's Food & Travel Blog
CAFE5
Version 5 of the CAFE phylogenetics software
cheatsheets
RStudio Cheat Sheets
containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
MuWU
Mu-seq Workflow Utility
WEScropbio
As part of a set of analysis pipeline comparisons organized by the West German Genome Center, this particular workflow is designed to analyze Whole Exome Sequencing samples.
tgstoecker's Repositories
tgstoecker/A2TEA.WebApp
R Shiny web application for the inspection, filtering & analysis of results generated by the A2TEA pipeline
tgstoecker/A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
tgstoecker/WEScropbio
As part of a set of analysis pipeline comparisons organized by the West German Genome Center, this particular workflow is designed to analyze Whole Exome Sequencing samples.
tgstoecker/advanced-shiny
🤹 Shiny tips & tricks for improving your apps and solving common problems
tgstoecker/AHRD_Snakemake
Snakemake wrapper for AHRD
tgstoecker/april_tyll_blog
April and Tyll's Food & Travel Blog
tgstoecker/CAFE5
Version 5 of the CAFE phylogenetics software
tgstoecker/cheatsheets
RStudio Cheat Sheets
tgstoecker/containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
tgstoecker/MuWU
Mu-seq Workflow Utility
tgstoecker/GenomicDistributions
Calculate and plot distributions of genomic ranges
tgstoecker/ipoolseq-pipeline
A pipeline for the analysis of iPool-Seq data
tgstoecker/LearningBayes
An introduction to Bayesian statistics
tgstoecker/mergAHRD
Merging tool for AHRD output tables
tgstoecker/micro
A modern and intuitive terminal-based text editor
tgstoecker/mitra
mapping (MuWU) insertions on different reference assemblies
tgstoecker/RAW-ABS
Alignment based workflow for Illumina Short reads
tgstoecker/Rust_fun
Collection of learning material and personal projects all about Rust
tgstoecker/sarlaccPit
Useful code snippets and tricks for the Microsoft world: Azure, PowerShell, M365, etc.
tgstoecker/SIB_course_nextflow_Nov_2021
Nextflow course 2021
tgstoecker/single-cell-training
Website hosted at https://sib-swiss.github.io/single-cell-training/latest/
tgstoecker/submission_checklist
tgstoecker/teaching
tgstoecker/tgstoecker
tgstoecker/trial_quarto_progress_report_24_08_22
A first fun and short presentation done with quarto
tgstoecker/useful-sed
Useful sed scripts & patterns.
tgstoecker/Webdav-uploader
tgstoecker/WGS_WGGC_2021_AG_Schoof
tgstoecker/Yu2021NaturePlants
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits