/Res3DUNET

Segmentation tool for the segmentation of the pancreas in CT scans

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

implementation of 3D res unet framework in Keras

Included code is still in the alpha stage

The architicture was inspired by [U-Net: Convolutional Networks for Biomedical Image Segmentation] [arXiv:1505.04597]

Overview

Data

Contained 90 late venous phased contrast enhanced CT scans. Use and access to is restricted by the The General Data Protection Regulation (EU) 2016/679 ("GDPR").

Model

image img/model.png description

Training

Dependencies

The code depends on the following libraries:

  • Tensorflow
  • Keras

The code was solely tested in Python3

Run

Training

run python3 training.py

inference

run python3 inference.py