Pinned Repositories
bc_md
calitas
Chrom3D
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
gen_seg
gget
gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.
paper3
tharvesh's Repositories
tharvesh/paper3
tharvesh/bc_md
tharvesh/calitas
tharvesh/Chrom3D
tharvesh/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
tharvesh/gen_seg
tharvesh/gget
gget enables efficient querying of genomic databases, such as Ensembl, UniProt, NCBI, directly into a Python or terminal programming environment. It was designed to support genomic data analysis.
tharvesh/ggxmean
tharvesh/GOexpress
This is a read-only mirror of the Bioconductor SVN repository. Contributions: https://github.com/kevinrue/GOexpress. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GOexpress. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GOexpress
tharvesh/HiCBricks
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
tharvesh/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
tharvesh/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
tharvesh/imp_data_analysis_codes_R
Snippets for NGS EDA
tharvesh/labs
Scripts for HarvardX courses: PH525x
tharvesh/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
tharvesh/Nature_Protocols_Chrom3D_data_and_scripts
tharvesh/NG_TAD_clique_analysis
tharvesh/poster_barcelona
Poster
tharvesh/preprocess_script
tharvesh/pure-bash-bible
📖 A collection of pure bash alternatives to external processes.
tharvesh/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
tharvesh/QoRTs
Quality of RNA-Seq Toolset
tharvesh/rafalib
tharvesh/rseqc
RNA-Seq Quality Control: Generates QC metrics for RNA-Seq data using the RSeQC suite; a graphical report of these metrics can be viewed on the DNAnexus website
tharvesh/Section_03
tharvesh/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
tharvesh/tcr-pmhc
tharvesh/tharvesh.github.io
tharvesh/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities