Pinned Repositories
megapharokka
A fork of Pharokka to handle enVhogs
CAT_dev
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
CAT_pack
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
ICTV_TaxonomyChallenge_CAT
CAT results for the ICTV taxonomy challenge
Viromics-Workshop-MGX
CAT
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
JenaViromics2022
megapharokka
A fork of megapharokka, has options disabled that make issues with large datasets and does a sequence2profile search instead of a sequence2sequence search with envhogs.
RAT_paper
thauptfeld's Repositories
thauptfeld/CAT
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
thauptfeld/JenaViromics2022
thauptfeld/megapharokka
A fork of megapharokka, has options disabled that make issues with large datasets and does a sequence2profile search instead of a sequence2sequence search with envhogs.
thauptfeld/RAT_paper