Phylogician - 0.4v

Our approach to visualization of phylogenetics trees using javascript and d3.js

We will build a web app for tree visualization taking in consideration commentaries and criticisms of the community such as:

Humbly inspired by the work of others, we will use TnT, d3, express and node.

Install and run it.

$ git clone git@github.com:theJensenLab/phyloTreeVizJS.git
$ cd phyloTreeVizJS
$ npm install
$ npm run server:dev

If you are working on a specific branch:

$ git checkout specific_branch
$ npm install
$ npm run server:dev

If you get the error:

npm ERR! missing script: server:dev

then the branch where you are does not have the server:dev script using webpack...

Please run:

npm test

We use mocha and chai to do test.

To make a new test, just put the file in tests/ and name it with tests.js prefix.

You must load chai in the beginning if you will be using expect:

'use strict'

let expect = require('chai').expect

We have a development roadmap separated in milestones

We welcome suggestions and criticism from the community. Please use the github issue tracker

Also, check out the milestone page to see if a feature you are requesting is already schedule to be part of Phylogician.

branch name:

example: t-firstTree

# local
$ git checkout -b f-name-of-my-branch

# push new branch
$ git push --set-upstream f-name-of-my-branch

After branch is merged it can be deleted:

$ git branch -d f-seg #local
$ git push origin --delete f-seg

develop