Pinned Repositories
Adafruit_Python_MPR121
Python library for interfacing with a MPR121 capacitive touch sensor on the Raspberry Pi, BeagleBone Black, etc.
Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
brainhacks
Anything related to neurohacking that I'm working on
BYB-Neural-Recorder
A neural recording app for the PC and Macs. Runs on Windows, Linux and OSX
ca_source_extraction
Complete Matlab pipeline for large scale calcium imaging data analysis
cellfinder
Automated 3D cell detection and registration of whole-brain images
cellfinder-core
Standalone cellfinder cell detection algorithm
cellfinder-napari
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari
MultiNEAT
Portable NeuroEvolution Library
web-scraping
Tutorial for web scraping in Python
thecobb's Repositories
thecobb/MultiNEAT
Portable NeuroEvolution Library
thecobb/Adafruit_Python_MPR121
Python library for interfacing with a MPR121 capacitive touch sensor on the Raspberry Pi, BeagleBone Black, etc.
thecobb/Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
thecobb/brainhacks
Anything related to neurohacking that I'm working on
thecobb/BYB-Neural-Recorder
A neural recording app for the PC and Macs. Runs on Windows, Linux and OSX
thecobb/ca_source_extraction
Complete Matlab pipeline for large scale calcium imaging data analysis
thecobb/cellfinder
Automated 3D cell detection and registration of whole-brain images
thecobb/cellfinder-core
Standalone cellfinder cell detection algorithm
thecobb/cellfinder-napari
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari
thecobb/Class-Personal-Projects
This is a depo where I'll post code I'm working on for classes and update it with time to improve it
thecobb/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
thecobb/dabl
Data Analysis Baseline Library
thecobb/deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
thecobb/DeepSlice
A python package which aligns histology to the Allen Brain Atlas using deep learning.
thecobb/device-arduino
Sample code to connect Arduino devices to the IBM Watson IoT Platform
thecobb/e6691_2022spring_paperreviewsrepo_shared
thecobb/EEGLearn
A set of functions for supervised feature learning/classification of mental states from EEG based on "EEG images" idea.
thecobb/filterpy
Python Kalman filtering and optimal estimation library. Implements Kalman filter, particle filter, Extended Kalman filter, Unscented Kalman filter, g-h (alpha-beta), least squares, H Infinity, smoothers, and more. Has companion book 'Kalman and Bayesian Filters in Python'.
thecobb/first-project
This will be my first project and mainly be used for practicing my interfacing with Github
thecobb/fMRI-Data-project
A repository for the code that will be used in the fMRI analysis of Columbia's functional imaging of the brain course.
thecobb/habaneroMSubmit
For submission of Matlab functions/scripts (with Matlab functions/scripts) to Columbia University's Habanero HPC.
thecobb/martin_et_al_cell_2019
Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"
thecobb/Medium
Code related to blog posts on my Medium page
thecobb/mousecam
A head-mounted camera system integrates detailed behavioral monitoring with multichannel electrophysiology in freely moving mice
thecobb/napari
napari: a fast, interactive, multi-dimensional image viewer for python
thecobb/RPiCameraPlugin
A plugin for the open-ephys plugin-GUI to control a Raspberry Pi camera
thecobb/sciluigi
A light-weight wrapper library around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular
thecobb/siren
Official implementation of "Implicit Neural Representations with Periodic Activation Functions"
thecobb/ultrasound-nerve-segmentation
Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras
thecobb/xgboost
Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow