genes with different dynamics across branches + Pie charts in nodes of PAGA graphs

[massonix]

Dear PAGA team,

Thanks for developing this tool, it's been very useful for my research!

I would like to kindly ask you two questions I have regarding its usage. First, in my dataset I have a branching event in which undifferentiated cells can follow two different trajectories as time progresses. PAGA has been able to detect this in a finer-grained resolution than other tools that I've tried. Now, I would like to study the branch-specific gene dynamics in a similar way to the BEAM extension of monocle. Is that possible with PAGA? (I couldn't find it in the tutorial).

Second, I would like to create a plot like the extended data figure 11e of the Tabula Muris senis (page 40). Is this a built-in tool of PAGA or should I play with matplotlib/seaborn?

Thanks a lot for your precious time and help

Ramon