theislab/paga

Issues

• Replacement of / Alternative to the ForceAtlas2 package

  #32 opened 3 months ago by jasonleongbio
  0

• Questions about adding category annotation in pl.paga_path

  #31 opened 5 months ago by Yansr3
  0

• RNA velocity

  #19 opened 3 years ago by suminwei2772
  2

• zebrafish example bug

  #2 opened 6 years ago by AltynaiA
  14

• Overlay paga-trajectory result on umap

  #28 opened 2 years ago by parkjooyoung99
  1

• Dahlin data access

  #8 opened 5 years ago by sgmccalla
  3

• Legend loc for PAGA

  #30 opened 2 years ago by flde
  0

• Questions related PAGA directions analysis arrows.

  #29 opened 2 years ago by mayurdoke6
  0

• Index of data output from sc.pl.paga_path

  #27 opened 2 years ago by sevlandais
  0

• Paga results in tabular form

  #26 opened 3 years ago by julie-jch
  0

• Summer student from Pinello Lab at Harvard seeking help from Theis Lab

  #20 opened 3 years ago by rebecca-c21
  1

• The paga

  #25 opened 3 years ago by yuanzhiyuan
  1

• Failure to load dahlin18 data

  #24 opened 3 years ago by sgmccalla
  0

• Specify root based on specific genes

  #23 opened 4 years ago by GabyBG
  0

• Faithfulness of PAGA embedding

  #22 opened 4 years ago by EliseAld
  0

• About caculation of PAGA connectivity score

  #21 opened 4 years ago by hahia
  0

• RNA velocity and fig3 in the Genome Bio paper

  #11 opened 5 years ago by DHGK
  4

• _get_connectivities_tree_v1_0

  #18 opened 4 years ago by masato-tsutsui
  0

• sc.utils.merge_groups does not exist

  #17 opened 4 years ago by davidfstein
  0

• genes with different dynamics across branches + Pie charts in nodes of PAGA graphs

  #15 opened 5 years ago by massonix
  0

• Running Planarian lineages: preprocessing using Scanpy Notebook

  #3 opened 5 years ago by ElHirad
  3

• No /write/pos.csv file as input for blood/nestorowa16

  #6 opened 6 years ago by Bio-designer
  1

• About the knn graph

  #13 opened 5 years ago by xuebaliang
  0

• Write network file

  #12 opened 5 years ago by sgmccalla
  0

• paga on integrated datasets

  #9 opened 5 years ago by DHGK
  2

• ERROR: Axes instance argument was not found in a figure

  #10 opened 5 years ago by Pikachu233
  0

• Genome Biology link is wrong?

  #7 opened 6 years ago by zaczap
  2

• 1M_neurons link in README.md goes to logfile_1.3M.txt

  #5 opened 6 years ago by fbnrst
  0

• PAGA of the 1.3mln 10x dataset

  #1 opened 6 years ago by dkobak
  31