theislab/paga

About caculation of PAGA connectivity score

hahia opened this issue · 0 comments

hahia commented

Hello, I'm new to PAGA connectivity score. I don't understand how paga connectivity score is calculated.

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Can anyone explain what's mean of random assignment of edges?

And if the under graph is KNN graph, There is one 'inter edge' between blue cluster and gray cluster? I don't known the mean of inter edge.
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Thank anyone for comment.