Pinned Repositories
diversificationlives
Response to Louca & Pennell and Pagel
selac
Model by O'Meara, Chai, and Gilchrist for SELection on Amino acids and/or Codons
selac_paper
corHMM
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
Fossils_impact_BO
hisse
Hidden State Speciation and Extinction
OUwie
Estimates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes.
sleq
A sleek package to deal with sequences in R. Joint O'Meara lab project.
thej022214's Repositories
thej022214/corHMM
Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treating rate classes as “hidden” states in a Markov process.
thej022214/OUwie
Estimates and compares rate differences of continuous character evolution under Brownian motion and a new set of Ornstein-Uhlenbeck (OU) models that allow the strength of selection and drift to vary across selective regimes.
thej022214/hisse
Hidden State Speciation and Extinction
thej022214/Fossils_impact_BO
thej022214/sleq
A sleek package to deal with sequences in R. Joint O'Meara lab project.