themattinthehatt
Research scientist in computational neuroscience who also enjoys playing around with creative coding
Zuckerman Institute, Columbia UniversityNew York, NY
Pinned Repositories
Pose-app
A Lightning app for animal pose estimation.
deepgraphpose
DeepGraphPose
eks
Ensembling and kalman smoothing for pose estimation
lightning-pose
Accelerated pose estimation and tracking using semi-supervised convolutional networks.
behavenet
Toolbox for analyzing behavioral videos and neural activity
daart
Deep learning for animal action recognition toolbox
dreamscape
Playing around with generative models trained on natural images, along with (eventually) some visualization tools.
lightning-pose-2024-nat-methods
Code to reproduce the figures in the Lightning Pose 2024 Nature Methods paper.
netlds
rlvm
MATLAB implementation of a rectified latent variable model for analysis of neural time series data.
themattinthehatt's Repositories
themattinthehatt/behavenet
Toolbox for analyzing behavioral videos and neural activity
themattinthehatt/daart
Deep learning for animal action recognition toolbox
themattinthehatt/dreamscape
Playing around with generative models trained on natural images, along with (eventually) some visualization tools.
themattinthehatt/rlvm
MATLAB implementation of a rectified latent variable model for analysis of neural time series data.
themattinthehatt/lightning-pose-2024-nat-methods
Code to reproduce the figures in the Lightning Pose 2024 Nature Methods paper.
themattinthehatt/netlds
themattinthehatt/Tubeworld
A fantastical journey into a primitive 3D world that is probably what the inside of a computer looks like.
themattinthehatt/daart_utils
Utilities for training and analyzing daart models
themattinthehatt/gam
A generalized affine model for analysis of neural time series data.
themattinthehatt/vid-viz
A collection of image manipulation tools in Python/OpenCV for creating visualizations out of source videos
themattinthehatt/whiteway-et-al-2019-nbdt
Code for running analyses in Whiteway et al 2019
themattinthehatt/themattinthehatt.github.io
Personal webpage
themattinthehatt/Caltech_DATASAI_Neuroscience_23
A course organized by the Chen Institute for Neuroscience at Caltech on data analysis techniques in neuroscience
themattinthehatt/convNIM
Extension of the NIM to handle convolution of subunit outputs with learned kernels.
themattinthehatt/eks_data
Example data for EKS
themattinthehatt/js-sketches
A collection of sketches in javascript and three.js
themattinthehatt/lightning
Build and train PyTorch models and connect them to the ML lifecycle using Lightning App templates, without handling DIY infrastructure, cost management, scaling, and other headaches.
themattinthehatt/neuropixels_course_2024
Resources for the IBL portion of the UCL Neuropixels Course 2024
themattinthehatt/tf-deepdream
Playing around with deep dream - because there are never enough eyes.
themattinthehatt/tubeworld-ogl
A 3D polygon world built with C++/OpenGL
themattinthehatt/tutorials
A collection of coding tutorials I've worked on over the years