the PAN lab
The Parallel computing, Artificial intelligence, and Network science (PAN) Lab in the School of Computer Science and the Dept. of Microbiology and Plant Biology
Norman, OK
Pinned Repositories
Community_stoichiometric_model
Endoscopic_OCT_Epidural
Code used for the paper "Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning""
Endoscopic_OCT_Veress_Needle
GattacaNet2
LINA
Seq2MAG
Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)
Sipros4
Sipros for stable isotopic mass spectrum meta proteomic
Supercomputing_Instructions
Useful information to use the supercomputers
thepanlab.github.io
Lab homepage
ukb_scripts
Scripts to download, process and merge ukb SNPs data
the PAN lab's Repositories
thepanlab/Seq2MAG
Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)
thepanlab/Sipros4
Sipros for stable isotopic mass spectrum meta proteomic
thepanlab/LINA
thepanlab/Supercomputing_Instructions
Useful information to use the supercomputers
thepanlab/GattacaNet2
thepanlab/Community_stoichiometric_model
thepanlab/Endoscopic_OCT_Epidural
Code used for the paper "Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning""
thepanlab/Endoscopic_OCT_Veress_Needle
thepanlab/FOCT_kidney
Code for the paper: "Deep-learning-aided forward optical coherence tomography endoscope for percutaneous nephrostomy guidance"
thepanlab/GattacaNet
predictive genomics
thepanlab/gcloud
Google Cloud tutorial and setup
thepanlab/Raxport.net
.net version of Raxport for scan extraction of raw file
thepanlab/thepanlab.github.io
Lab homepage
thepanlab/ukb_scripts
Scripts to download, process and merge ukb SNPs data
thepanlab/UniFam
Scalable functional annotation of genomes
thepanlab/Aerith
R package for isotopic mass spectra data
thepanlab/DeepLearningTutorials
thepanlab/MetagenomicsTree
Data processing tree for metagenomics
thepanlab/PDN_Autograder
The autograder for Projects 1 through 5 for the CS PDN course taught by Dr. Pan
thepanlab/Sipros
Proteomic Stable Isotope Probing and Metaproteomics
thepanlab/timecourseBiomarker
This is the code repository for the GLMM analysis of metabolomic biomarker discovery in the paper “Persistent Biofluid Small Molecule Alterations Induced by Trypanosoma Cruzi Infection Are Not Restored by Antiparasitic Treatment.”
thepanlab/WetlandSoil
Stoichiometric model and scripts used in wetland soil project