Pinned Repositories
basulab
biosensor
Code for image analysis of ratiometric biosensors
bud-scars
ImageJ scripts for analysis of yeast bud scars
burguete
Scripts for the Burguete and St.George-Hyslop labs
califano
cervix-nerves
Scripts for analysis of whole-slide images stained with DAB
Htt_Inclusions
imagej-plugins
Custom plugins and macros for ImageJ and Fiji
percent-dead-cells
Calculate percent dead cells by taking the ratio between counts in two channels
stereology
ImageJ scripts for stereology and morphometry
theresaswayne's Repositories
theresaswayne/stereology
ImageJ scripts for stereology and morphometry
theresaswayne/cervix-nerves
Scripts for analysis of whole-slide images stained with DAB
theresaswayne/imagej-plugins
Custom plugins and macros for ImageJ and Fiji
theresaswayne/percent-dead-cells
Calculate percent dead cells by taking the ratio between counts in two channels
theresaswayne/basulab
theresaswayne/biosensor
Code for image analysis of ratiometric biosensors
theresaswayne/bud-scars
ImageJ scripts for analysis of yeast bud scars
theresaswayne/burguete
Scripts for the Burguete and St.George-Hyslop labs
theresaswayne/califano
theresaswayne/cellprofiler
Miscellaneous CellProfiler pipelines and related code
theresaswayne/codes-for-Iezza-et-al-2022
The codes I used to generate random sections and run my analysis for stereo logy
theresaswayne/contractile-rings
ImageJ scripts for analyzing yeast contractile ring closure
theresaswayne/coreusage
Scripts to monitor and summarize usage of core facility instruments
theresaswayne/Coursework
Coursework
theresaswayne/cp-colocalization
CellProfiler colocalization pipelines
theresaswayne/data-analysis
Scripts for processing and plotting data
theresaswayne/Htt_Inclusions
theresaswayne/find_close_peaks
Updated to save ROIs, results, and log; accommodates different peak heights for each channel.
theresaswayne/GhafariClark2019
theresaswayne/lizchang
Macros and scripts for the Chang lab
theresaswayne/MEN-mito-loc
Analyzing mitochondrial localization of MEN proteins using R
theresaswayne/mitograph_scripts
Accessory scripts for Mitograph
theresaswayne/napari-training-course
Lectures for a napari training course
theresaswayne/nicholasarpaia
Scripts for the Arpaia lab
theresaswayne/nis-elements
NIS Elements macros, jobs, and scripts
theresaswayne/nuclei-overlap
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
theresaswayne/qupath-scripts
theresaswayne/tissue-cell-counting
Tools for counting cells in tissue sections and comparing with manual counts
theresaswayne/welch_fibrosis
Scripts for analyzing fibrosis in heart images
theresaswayne/zhiguozhang
Scripts for Zhiguo Zhang's lab