thierrygrange
Group leader, Epigenome & Paleogenome Research Director CNRS Genomics, Paleogenomics, Evolutionary Genomics
Institut Jacques Monod, CNRS, Université de ParisParis France
Pinned Repositories
READv2
parsnp
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
thierrygrange's Repositories
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