thompsonsed
Data Scientist | PhD Imperial College London and National University of Singapore | Computational Biology | Ecology
Cell and Gene Therapy CatapultLondon
Pinned Repositories
BirdDiversityProject
Example of rasterisation of maps from coastline shapefiles and generation of density maps from coastline and glacial rasters.
check_git_dirs
Script for checking if git repos have uncommitted changes or needs pushing.
covid_testing
Simple plots of UK COVID cases, based on data provided by the UK government.
FractalGeneration
Generate fractals using python.
necsim
Neutral Ecology simulation package written in C++
pycoalescence
pycoalescence_examples
Examples for pycoalescence
RandomNumberGeneration
Testing random number generation in C++.
rcoalescence
R package for simulating neutral ecology.
rcoalescence_examples
Examples using the rcoalescence package for R
thompsonsed's Repositories
thompsonsed/RandomNumberGeneration
Testing random number generation in C++.
thompsonsed/FractalGeneration
Generate fractals using python.
thompsonsed/rcoalescence
R package for simulating neutral ecology.
thompsonsed/rcoalescence_examples
Examples using the rcoalescence package for R
thompsonsed/check_git_dirs
Script for checking if git repos have uncommitted changes or needs pushing.
thompsonsed/covid_testing
Simple plots of UK COVID cases, based on data provided by the UK government.
thompsonsed/necsim
Neutral Ecology simulation package written in C++
thompsonsed/pycoalescence
thompsonsed/pycoalescence_examples
Examples for pycoalescence
thompsonsed/dash-qrcode
QR Code scanner for Dash, based on react-qr-reader
thompsonsed/datascience_ignores
Provides a set of default data-science ignores and a python script for creation and appending of .gitignore files.
thompsonsed/DictionaryCLI
Command line dictionary and thesaurus via google define
thompsonsed/file_scoring
Command-line utility for counting the most common words in text files and directories.
thompsonsed/gpy-feedstock
A conda-smithy repository for gpy.
thompsonsed/HeartDiseaseML
Data exploration and analysis using machine learning of the Heart Disease dataset, available from https://www.kaggle.com/ronitf/heart-disease-uci
thompsonsed/iterativewgcna-feedstock
A conda-smithy repository for iterativewgcna.
thompsonsed/knitr
A general-purpose tool for dynamic report generation in R
thompsonsed/palaeo_neutral_sims
Neutral simulations of early tetrapod diversity.
thompsonsed/pycoalescence-feedstock
A conda-smithy repository for pycoalescence.
thompsonsed/pycoalescence_bench
Micro-benchmarks for pycoalescence
thompsonsed/pyqms
pyQms, generalized, fast and accurate mass spectrometry data quantification
thompsonsed/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
thompsonsed/Qogir-theme
Qogir is a flat Design theme for GTK
thompsonsed/rfsim
A toy simulation demonstrating Python interfacing with C++
thompsonsed/somoclu-feedstock
A conda-smithy repository for somoclu.
thompsonsed/sortphotos
SortPhotos is a Python script that organizes photos and videos into folders using date/time information
thompsonsed/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
thompsonsed/systemPipeR
Project Website:
thompsonsed/thompsonsed
thompsonsed/traitlets
A lightweight Traits like module