Pinned Repositories
neurodesktop
The plug-and-play, browser-accessible, containerised data analysis environment.
3DUnetCNN
Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
ANTs
Advanced Normalization Tools (ANTs)
Atlas-GAN
[ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates
DICOM2Vid
Just a tool to make DICOM folders into videos for participants etc.
FingertipMappingMND
Code for MND fingertip mapping, whole body localisation, and behavioural experiments
LASHiS
Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.
myelin_mapping_nipype
a nipype implementation of T1/T2 myelin mapping
nifti_normalise
A script to normalise niifti (.nii .nii.gz) images using two PcTs and clamp to 0-100. Requires FSL.
PialNet
Repo for the 2020 UQ Summer School of AI Hackathon project: "Segmentation of Magnetic Resonance Angiography data"
thomshaw92's Repositories
thomshaw92/LASHiS
Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.
thomshaw92/myelin_mapping_nipype
a nipype implementation of T1/T2 myelin mapping
thomshaw92/DICOM2Vid
Just a tool to make DICOM folders into videos for participants etc.
thomshaw92/FingertipMappingMND
Code for MND fingertip mapping, whole body localisation, and behavioural experiments
thomshaw92/PialNet
Repo for the 2020 UQ Summer School of AI Hackathon project: "Segmentation of Magnetic Resonance Angiography data"
thomshaw92/3DUnetCNN
Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
thomshaw92/ANTs
Advanced Normalization Tools (ANTs)
thomshaw92/Atlas-GAN
[ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates
thomshaw92/backup_dumu_to_rdm
A pretty simple bash file to archive all data on one old filesystem and place it on another
thomshaw92/BeLong
Scripts for the BeLong study (spine segmentation, brain seg, QSM, DWI, etc)
thomshaw92/container_recipes
Container (SIMG,Docker) recipes for a number of projects
thomshaw92/DEEPSEACAT-Deep-learning-for-Segmentation-And-CharActerisation-of-Tissue
Deep learning for Segmentation And CharActerisation of Tissue
thomshaw92/dicom2nifti
thomshaw92/hackathon2020
Website for the 2020 OHBM Hackathon (Location: 3rd planet from the Sun)
thomshaw92/MeshProcessing
Convert binary map to mesh. The binary map is in nifti format and the mesh is in stl file type.
thomshaw92/MLMedic
Putting powerful tools in the hand of clinicians
thomshaw92/multimodal-connectomes
Multimodal connectomes using MICA-PIPE in MND vs HCs
thomshaw92/neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
thomshaw92/neurodesk.github.io
thomshaw92/neurodesktop
The plug-and-play, browser-accessible, containerised data analysis environment.
thomshaw92/NonLinRegImprovesSegRel
Non linear registration improves segmentation reliability
thomshaw92/Optimising_Exercise_Structural_MRI
This is the code repository for the optimising exercise study for structural MRI data (i.e., pre-processing, longitudinal/cross sectional cortical thickness, hippocampus volumetry using LASHiS and ASHS).
thomshaw92/raw_MR_to_image
This code allows reconstruction of raw data acquired with SMURF sequence
thomshaw92/sct_tutorial_data
Data and scripts for SCT's tutorials and courses
thomshaw92/SemanticSegmentation
thomshaw92/STIMfMRI
thomshaw92/STIMMRI
Scripts for STIMMRI project
thomshaw92/thomshaw92.github.io
thomshaw92/TongueSegMND
Exploring tongue segmentation in MND patients. Segmentation, data wrangling, analysis.
thomshaw92/TrainTrack_containers_2020
Repo for Brain Hack 2020