Pinned Repositories
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
autoai
Python based open source AutoAI with training code generation
avocado
A Variant Caller, Distributed. Apache 2 licensed.
BCCD_Dataset
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
biobakery
bioBakery tools for meta'omic profiling
BOLD5000
Official code release for BOLD5000 Release 2.0
cannoli
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
cdhit
Automatically exported from code.google.com/p/cdhit
CellProfiler
An open-source application for biological image analysis
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
thoughtsynapse's Repositories
thoughtsynapse/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
thoughtsynapse/autoai
Python based open source AutoAI with training code generation
thoughtsynapse/BCCD_Dataset
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
thoughtsynapse/biobakery
bioBakery tools for meta'omic profiling
thoughtsynapse/BOLD5000
Official code release for BOLD5000 Release 2.0
thoughtsynapse/cannoli
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
thoughtsynapse/CellProfiler
An open-source application for biological image analysis
thoughtsynapse/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
thoughtsynapse/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
thoughtsynapse/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
thoughtsynapse/pgap
NCBI Prokaryotic Genome Annotation Pipeline
thoughtsynapse/q2cli
Command line interface for QIIME 2
thoughtsynapse/web-free-data-science
Tools for teaching and doing data science without an internet connection
thoughtsynapse/ar-cutpaste
Cut and paste your surroundings using AR
thoughtsynapse/cmapR
Tools for manipulating annotated data matrices
thoughtsynapse/cocoapi
COCO API - Dataset @ http://cocodataset.org/
thoughtsynapse/fMRI_analysis
Note some points about fMRI based time series analysis methods
thoughtsynapse/GLMsingle
A toolbox for accurate single-trial estimates in fMRI time-series data
thoughtsynapse/gztool
extract random-positioned data from gzip files with no penalty, including gzip tailing like with 'tail -f' !
thoughtsynapse/htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
thoughtsynapse/ImageCompressionAPI
Image Compressor API compresses JPG, PNG, GIF & SVG images in both Lossy and Lossless format. It's free to use API with production level quality.
thoughtsynapse/learning-machines
thoughtsynapse/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
thoughtsynapse/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
thoughtsynapse/qiime2
Official repository for the QIIME 2 framework.
thoughtsynapse/scipy
SciPy library main repository
thoughtsynapse/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
thoughtsynapse/spark
Apache Spark - A unified analytics engine for large-scale data processing
thoughtsynapse/STAR
RNA-seq aligner
thoughtsynapse/thoughtsynapse.github.io
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