thsuanwu
Physician scientist in training // MD-PhD student in Biochemistry @StanfordMed // BS in biology '17, MS in biomedical informatics '18 @Stanford
Pinned Repositories
aegea
Amazon Web Services Operator Interface
BIOC281
Repository for BIOC 281: Introduction to Single Cell Expression Analysis
cs233_gtda_hw4
Starter code for HW4 of CS233: Geometric and Topological Data Analysis @Stanford.
dca
Deep count autoencoder for denoising scRNA-seq data
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
docker-cellranger
Code for docker image containing software for alignment of scRNA-seq reads
docker-stacks
Ready-to-run Docker images containing Jupyter applications
dotdotdot
Example vignette for dotdotdot software
forward
Sherlock Port Forwarding Utility
fullforce_APPPHYS293
Final project for APPPHY293 course 2023
thsuanwu's Repositories
thsuanwu/aegea
Amazon Web Services Operator Interface
thsuanwu/BIOC281
Repository for BIOC 281: Introduction to Single Cell Expression Analysis
thsuanwu/cs233_gtda_hw4
Starter code for HW4 of CS233: Geometric and Topological Data Analysis @Stanford.
thsuanwu/dca
Deep count autoencoder for denoising scRNA-seq data
thsuanwu/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
thsuanwu/docker-cellranger
Code for docker image containing software for alignment of scRNA-seq reads
thsuanwu/docker-stacks
Ready-to-run Docker images containing Jupyter applications
thsuanwu/dotdotdot
Example vignette for dotdotdot software
thsuanwu/forward
Sherlock Port Forwarding Utility
thsuanwu/fullforce_APPPHYS293
Final project for APPPHY293 course 2023
thsuanwu/jupyter-singleCell-docker
thsuanwu/krasnowlab_utilities
A collection of scripts for common data management and processing tasks
thsuanwu/PyloricNetwork
Implementation of the pyloric network of the lobster somatogastric ganglion system of Prinz, Marder, et al.
thsuanwu/seurat
R toolkit for single cell genomics
thsuanwu/Sicilian
thsuanwu/SpikeLearning_APPPHYS293
thsuanwu/thsuanwu.github.io
thsuanwu/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data