/SUM_UP_of_all_my_work

Here you will be able to find a sum up of all my work, grouped by computing experiencies and dissertation review!

SUM UP of my work and experiences

Here you will be able to find a sum up of all my work, grouped by internship reports, dissertation reviews, and computing experiencies.

You can also find my CV here.

Table of Contents

Internship Reports:

Understand the mechanisms by which birds are producing vocalizations, with Pauline Provini at CRI 2020

By following this link you will find the page associated with my 5 months internship with Pauline Provini report at CRI (Centre de Recherche Interdsiciplinaire) where I looked at the influence of the phylogeny, size and nocturnality on acoustic parameters of bird's song, in the context of a morphofunctional study of birds vocal system. You will find on the page of the project, a pdf version of my presentation, and the programming part of this internship where I gathered and analysed birds' recordings. Following this internship, I gave a talk at SICB 2021 international conference cycle. You can find my talk here, (sorry for the quality). You can also have access to the weekly blog I kept during the internsip following this link.

During the summer break of 2021, I worked as a benevolent for 2 months to write a research paper on the work I started during my internship.

Prior to this internship I worked 3 weeks with a peer on a project proposed by Pauline Provini, creating the foundations for my internship. You can find the work we did (programs, research and blogs) here.

S6 Internship : A PHYLOGENETIC AND ECOLOGICAL STUDY OF SONGBIRDS EVOLUTIONARY DIVERGENCE, with Benjamin Warren and Clothilde Biard 2021

Here you will find the page associated with my 4 months internships report on songbirds evolutionary divergence on both a phylogenetic and ecological point of view.

Study of the cerebellum development in snakes, with Richard Wingate at Kings' College London 2019

Here you will find my report of the intership I made on summer 2019 at King's College London in the Developmental Neurobiology Department. My supervisor was Dr. Wingate. I studied snakes cerebellum, and their Purkinje cells ordering. I followed 3 different kinds of staining protocols : Nissl stain, Immunohistochemistry, and Golgi stain.

One week internship report, with Marc Eleaume at MNHN

Here is an internship report I wrote for a voluntary internship in HighSchool. It was my first of 2 internship with him at the MNHN where I worked on taking pictures of echinodermes for the ATLAS CEAMARC Dr. Eleaume is working on.

Dissertation Reviews:

A little guide to COVID-19 2020

Here is a work I did during the first French lockdown for my biology class. The assignement was to write an article in the continuity of the biology chapter written earlier in the year (Principles of animal forms and functions) and in realtion with the world cituation at that time (so in relation with either COVID-19 or the lockdown).

Principles of animal forms and functions 2020

Here you will find a biology chapter 2 classmates of mine and myself wrote for an assignment in biology class on "Principles of animal forms and functions". This pdf version is not optimal as our work was meant to be for an interactive website where multiple chapters (the one written by other teams in my class) where easily accesible. Sadly, the website was disolved after our assignement.

The unfulfilled promises of Transgenic Monkey 2019

This is a quick review of the socio-cultural impact of the generation of genetically engineered monkey model of human diseases. This work describe the reasons given to justify the experiments made on monkeys. It focus on the teams working on this research subject, who finances them, in which country they are located, what are there plan in the near future, etc … This review also look at the legal status of non-human primates and apes, and the jurisdiction and control of their use for scientific purpose. It also introduce some major controversies and the ethical issues to use monkeys in experiments.

Aquathon: Water quality in Brest 2019

You can find here my contribution to a 2 weeks Aquathon project organised by the CRI where my team and I tested the water quality in Brest to determine the well-being of the marine ecosystem.

Practical Work Thesis: Immunology and Genetics 2019

This is a recap of a 1 week laboratory work on an autoimmune disease I did during my first year. This work is about quantitative genetics and explain the localization of a gene using positional cloning. It is a study of a human autoimmune pathology using rats as an experimental model. It was written in collaboration with one of my classmate.

Interaction between visitors and animals in a zoo 2019

This is the study of the interaction between visitors and animals in La Ménagerie du Jardin des Plantes zoo for a Human's and Social's Sciences courses. (written in french) It was made in collaboration with two classmates.

TPE de Premiere "Genèse de la Vie sur Terre" 2017

Here is a work I did in collaboration with 2 peers in second year of highschool. It is written in french.

Computing experiences:

VR companion - World of Animus

With a small team of 3 students, for our XR-VR cours, we decided to create small creatures in a VR environment that you could interact with. You can find the project here!

AI final project, python

Here you can find a group project on Toxic Comment Classification with machine learning. The project is to build a model capable of detecting the toxicity of a comment, assigning probabilities for different levels of toxicity. Our model is trained on a wikipedia dataset comprised of comments from Wikipedia's discussion pages.

Machine learning projects, python

Here are a two examples of AI projects I did for group projects. I had many more projects and experienced with a diversity of different models like knn classifiers, linear classification, decision tree, neural network, CNN, random forest, and more...

Molecular Dynamic, python

This project was part of a semester course that aim at creating a dynamic modele of particules. You will find here the final itteration of the program and the resulting files. The simulation spawn particules at random positions and generates energetic forces that drives them, leading to a complex and dynamic 3D model of particules evolution. During the same teaching unit, my class was assigned some exercises on stochastic model and DNA sequence manipulations in order to get back into the swing of things.

Reanalizing data and learning about reproductibility, in R

This 3 weeks project intended to give student an idea of the importance of reproductibility in science by making groups of 4 students reanalyse data from a published paper. Here you will find the GitHub page with the program I wrote in collaboration with 3 other classmates in R language. I am not allowed to share our results, analysis, and the files needed to run the program (sorry) as it is not my intelectual propriety. But you can still find the programming I worked on where we rearanged the data, made statistical analysis and use linear regressions. We used multiples library including tidyverse and ggplot2.

Impact of Bison reintroduction in Siberia, in Python

Here is a simulation 2 classmates and I created during a 1 week project in python programing language. Our worked foccus of finding the optimal density of American bison to reintroduce in Siberia to slow down the thawing of the permafrost by trampling of the snow. The assignment was to find an application to create and use differential equations and define a relationship between a physical quantity (the functions, here the density of bisons to reintroduce) and their rates of change (the derivatives, here the thawing of the permafrost). We also made a poster to present our work and a paper summing up our findings. We used multiples library including matplotlib and numpy in order to use differential equations and plot our results.

Understand the mechanisms by which birds are producing vocalizations, with Pauline Provini at CRI, in R

During this internship I worked in Rstudio to gather sound from the web, extract data from those sounds (like the amplitude and frequency), analyse those data and make principal componenent analysis to compare those data to other variables such as birds' phylogeny, birds' size, and birds' nocturnality. I used multiples library such as soundgen, tuneR, here, dplyr, ggbiplot, ggtree, or phytools.

Rosalind exercises, in Python

Here and here are my try at begining tackling Rosalind programing problems either for my informatic class in L1 or just for the fun.

Prime number calculator, in Python

These are 3 prime numbers calculators that I pgrogramed that will print a list of every prime number from 2 to a maximum value that you input. Each of this program brings a new and inovative way to resolve the problem! Prime-number-calculator_1 iterates a list of non-primes numbers, a list of all numbers from 2 to a maximum value that you input, and it creates a list of prime numbers by doing the difference between the first two lists. Prime-number-calculator_2 define a function that tells if a given number is a prime number. Then it creates a list of all prime numbers in a range of 2 to a maximum value that you input, defining with the function if each number is prime or not. Prime-number-calculator_3 iterates a list of primes numbers starting by 2, and divide any numbers by this list. It also uses the time function to have an estimation of how quick the program is.

Random assignment generator

This program randomly assigns peoples names, from the #students list in the #students_list.py file, to a number (here 12, but this is just for the example). This number corresponds to an exercise that I have in my Biology class. So this program randomly assigns an exercise to my classmates.

Robotic experience:

Ant Swarm BOTs 2021

This interdisciplinary project at the edge of swarm robotics, biomimetism, and odometry is trying to simulate the behavior of worker ants. You can find another link to the project here.

Zumo bot 2021

Here you can find a project to implement code for a sumo robot using Zumo. The idea was to have a robot that could push other robot out of the ring. You can find the code here.

Car robot 2021

Here you can find the link to one of my first groupe project experience coding in C for robotic class. The assignment was to build a robot that could move forward for 1 meter, and than make a sqaure. You cand find here the code.