Pinned Repositories
GPTron
GPTron is a messenger of GPT models from OpenAI.
Plasmer
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
asap2
Automatically analyze prokaryotic 16S rRNA gene amplicon sequencing data using QIIME 2 and other tools.
ML_Tree_Wrapper
This program does alignment of protein or DNA sequences using muscle, trim the alignment using Gblock, and reconstruct ML phylogenetic trees using RAxML or FastTree.
PlasmidHunter
This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.
vbcg
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
tianrenmaogithub's Repositories
tianrenmaogithub/asap2
Automatically analyze prokaryotic 16S rRNA gene amplicon sequencing data using QIIME 2 and other tools.
tianrenmaogithub/vbcg
VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
tianrenmaogithub/ML_Tree_Wrapper
This program does alignment of protein or DNA sequences using muscle, trim the alignment using Gblock, and reconstruct ML phylogenetic trees using RAxML or FastTree.
tianrenmaogithub/PlasmidHunter
This tool predicts plasmid sequences from genomic and metagenomic assemblies using machine learning.