tilii's Stars
chrisquince/C-CONCOCT
Multithreaded C implementation of a Gaussian mixture model designed to speed up the clustering stage of CONCOCT but applicable to any GMM clustering.
songweizhi/Binning_refiner
Improving genome bins through the combination of different binning programs
pytorch/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
reneshbedre/bioinfokit
Bioinformatics data analysis and visualization toolkit
ellisdg/3DUnetCNN
Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
MIC-DKFZ/medicaldetectiontoolkit
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
asetkn/Tutorial-Image-and-Multiple-Bounding-Boxes-Augmentation-for-Deep-Learning-in-4-Steps
gangadhar-p/NucleiDetectron
7th place solution for the 2018 Data Science Bowl with a score of 0.591
matterport/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
HumanSignal/labelImg
LabelImg is now part of the Label Studio community. The popular image annotation tool created by Tzutalin is no longer actively being developed, but you can check out Label Studio, the open source data labeling tool for images, text, hypertext, audio, video and time-series data.
facebookresearch/Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
NBISweden/MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
pekrau/MolScript
The MolScript program produces publication-quality images of macromolecular 3D structures.
uym2/TreeShrink
Implementation of the TreeShrink problem
marbl/Mash
Fast genome and metagenome distance estimation using MinHash
HRGV/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
yangkky/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
gokceneraslan/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
interpretml/interpret
Fit interpretable models. Explain blackbox machine learning.
scikit-tda/tadasets
Synthetic data sets apt for Topological Data Analysis
scikit-tda/kepler-mapper
Kepler Mapper: A flexible Python implementation of the Mapper algorithm.
churchlab/UniRep
UniRep model, usage, and examples.
mw55309/Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
kblin/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
scikit-learn-contrib/stability-selection
scikit-learn compatible implementation of stability selection.
kylemcdonald/EmbeddingScripts
Collection of scripts for visualizing high dimensional data with scikit-learn and bh_tsne
nan0s7/nfancurve
A small and lightweight POSIX script for using a custom fan curve in Linux for those with an Nvidia GPU.
jiwoongim/ft-SNE
f-divergence based t-SNE
shap/shap
A game theoretic approach to explain the output of any machine learning model.
lmcinnes/umap
Uniform Manifold Approximation and Projection