timbitz/Whippet.jl

Full Isoforms

Opened this issue 8 years ago · 2 comments

timbitz commented 8 years ago

There has been a substantial interest in a Whippet feature to use all edges to produce full isoforms.

Alter annotation support to load all known edges.
Build/filter isoforms for legitimate txStart and txEnds
Predict or assign CDS start and end
Re-calculate expression values for these full-length isoforms
Assign known transcript ids to these isoforms if not found in annotation

timbitz commented 8 years ago

Moved to Whippet v0.4

kennyrebelo commented 7 months ago

Hello Tim,

I was wondering if this feature was implemented.

Thank you for your time.