Timp Lab

Timp Lab @ JHU

Pinned Repositories

bcmb_bootcamp
Repo for BCMB Computational Bootcamp Course
Language:Jupyter Notebook2 9 015
Cas9Enrichment
scripts for analysis associated with Cas9Enrichment publication
Language:Shell12 4 12
hummingbird
Language:Shell3 3 13
jhu-covid-pipeline
Viral Genomics Pipeline in use at JHU
Language:Shell3 7 00
nanoNOMe
nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
Language:Python18 6 15
nanopore-methylation-utilities
Language:Python29 2 59
ncov
ncov work
Language:Shell2 8 00
T2T-Epigenetics
Repository for analysis scripts for the T2T Epigenetics manuscript
Language:HTML7 2 21
Telomere_Length
This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"
Language:R5 2 01
timp_nanoporesv
Code supplement for Norris et al. paper on structural variation detection with
Language:Python6 3 10

Timp Lab's Repositories

timplab/nanopore-methylation-utilities
Language:Python29 2 59
timplab/nanoNOMe
nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
Language:Python18 6 15
timplab/Cas9Enrichment
scripts for analysis associated with Cas9Enrichment publication
Language:Shell12 4 12
timplab/T2T-Epigenetics
Repository for analysis scripts for the T2T Epigenetics manuscript
Language:HTML7 2 21
timplab/Telomere_Length
This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"
Language:R5 2 01
timplab/hummingbird
Language:Shell3 3 13
timplab/jhu-covid-pipeline
Viral Genomics Pipeline in use at JHU
Language:Shell3 7 00
timplab/bcmb_bootcamp
Repo for BCMB Computational Bootcamp Course
Language:Jupyter Notebook2 9 015
timplab/ncov
ncov work
Language:Shell2 8 00
timplab/ambic-epigenome
AMBIC Epigenomics project analysis
Language:Jupyter Notebook1 3 02
timplab/chm13_meth
Methylation analysis of chrx in chm13 assembly
Language:HTML1 3 0
timplab/Yeast-Telomere-Nanopore
Telomere length measurement
1 3 0
timplab/Drug_resistant_GBM
FLAIR and SUPPA2 analysis for "Targeting destabilized DNA g-quadruplexes and aberrant splicing in amyloid-like aggregate positive drug-resistant glioblastoma"
Language:Jupyter Notebook0 4 01
timplab/rna_consortia
Nanopore RNA consortia data and analysis
Language:Jupyter Notebook0 3 00
timplab/chicken
Language:R4 0
timplab/cpowgs_r21
Code/scripts involvign cpowgs R21 grant
Language:HTML2 0
timplab/dam_mutagensis_chemistry
Language:Jupyter Notebook
timplab/drewes_fmt
Analysis scripts for JCI Insight paper
Language:Shell4 0
timplab/fan_methylation_binning
Code used for methylation binning paper
Language:R1 0
timplab/fragillis
Code for analysis of fragillis toxin project
Language:R2 01
timplab/grossman_prolificans
genome assembly of Lomentospora prolificans
Language:Shell1 0
timplab/hg002_chrY_methylation
Code for analysis of methylation on HG002 chrY
Language:Python3 0
timplab/moth
Language:HTML1 0
timplab/nivar
analysis for C. nivariensis asm paper
Language:R3 01
timplab/tague_splitcre
All code for preprocessing sequencing data for split cre screen
Language:Shell2 0
timplab/timp_illumina
Language:R2 0
timplab/timp_oxa
Scripts for oxa paper analysis
Language:R4 0
timplab/vremanu
Code for VRE sequencing manuscript
Language:HTML3 01
timplab/yeh_sinv
Sequencing analysis for Yeh et al paper
Language:R3 0
timplab/Zuniga_Aikin_2024_ERK
Code for processing of RNA-seq data from "Sustained ERK Signaling Promotes G2 Cell Cycle Exit and primes cells for Whole Genome Duplication" Zuniga, Aikin, et al. (2024)
Language:Shell2 0