Pinned Repositories
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
bioconda-recipes
Conda recipes for the bioconda channel.
denovotranscript
A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
MalariaCellAtlas
Data and code associated with https://science.sciencemag.org/content/365/6455/eaaw2619
modules
Repository to host tool-specific module files for the Nextflow DSL2 community! Tim Little fork
nf-core-transcriptcorral
NF-core transcript corral pipeline to perform de novo assembly of RNAseq reads.
nf_bed2fasta
Simple Nextflow pipeline to count read alignments, and extract sequences, corresponding to regions specified by an input bed file.
PirMalariaSystemAnalysis
Github repository of code for the manuscript-in-preparation analysing pir multigene family expression across P. berghei and P. chabaudi rodent malarias from publicly available and novel RNA sequencing data.
Thesis_Github_221023
Code pertaining to the analysis of pir gene transcription from the PhD thesis of Timothy Little, submitted October 2022.
transcript_corral
Fork of transcript_corral, a de novo transcriptome nf-core pipeline, by Timothy Little.
timslittle's Repositories
timslittle/bioconda-recipes
Conda recipes for the bioconda channel.
timslittle/denovotranscript
A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
timslittle/MalariaCellAtlas
Data and code associated with https://science.sciencemag.org/content/365/6455/eaaw2619
timslittle/modules
Repository to host tool-specific module files for the Nextflow DSL2 community! Tim Little fork
timslittle/nf-core-transcriptcorral
NF-core transcript corral pipeline to perform de novo assembly of RNAseq reads.
timslittle/nf_bed2fasta
Simple Nextflow pipeline to count read alignments, and extract sequences, corresponding to regions specified by an input bed file.
timslittle/PirMalariaSystemAnalysis
Github repository of code for the manuscript-in-preparation analysing pir multigene family expression across P. berghei and P. chabaudi rodent malarias from publicly available and novel RNA sequencing data.
timslittle/Thesis_Github_221023
Code pertaining to the analysis of pir gene transcription from the PhD thesis of Timothy Little, submitted October 2022.
timslittle/transcript_corral
Fork of transcript_corral, a de novo transcriptome nf-core pipeline, by Timothy Little.