timtroendle/cookiecutter-reproducible-research

Issues

• Move to ruff

  #36 opened 8 months ago by timtroendle
  0

• Ensure that conda envs do not include default packages

  #35 opened 8 months ago by timtroendle
  1

• Add Snakemake workflow profile as override of local profile

  #29 opened 10 months ago by timtroendle
  0

• Simplify DAG creation

  #27 opened 10 months ago by timtroendle
  0

• Add ==highlighting== option for reports

  #30 opened 10 months ago by timtroendle
  0

• Add epub output

  #33 opened 10 months ago by timtroendle
  0

• Rename `tags` to `keywords`

  #24 opened 10 months ago by timtroendle
  1

• Improve test infrastructure

  #31 opened 10 months ago by timtroendle
  1

• Add test infrastructure for build artefacts

  #5 opened 10 months ago by timtroendle
  1

• pytest-pythonpath is obsolete as of pytest 7

  #28 opened 10 months ago by timtroendle
  0

• Update to released pytest-html version

  #32 opened 10 months ago by timtroendle
  0

• Add affiliations to documents

  #34 opened 10 months ago by timtroendle
  1

• Make demo case optional

  #26 opened 2 years ago by timtroendle
  0

• Conflict between pandoc-tablenos and pantable

  #23 opened 2 years ago by timtroendle
  1

• Switch to improved citation formatting in pandoc 2.11

  #1 opened 2 years ago by timtroendle
  2

• Add math to PDF

  #22 opened 2 years ago by timtroendle
  0

• Add snakemake's `conda-prefix` as config option

  #18 opened 2 years ago by timtroendle
  0

• Add snakemake object to Pyright builtins to avoid linting errors in VSCode

  #17 opened 2 years ago by timtroendle
  0

• Upgrade to Python 3.11

  #16 opened 2 years ago by timtroendle
  2

• Add test of DAG rule

  #20 opened 2 years ago by timtroendle
  1

• Set Snakemake profile through environment variable

  #14 opened 2 years ago by timtroendle
  0

• A potential bug about AttributeError and its solution

  #13 opened 2 years ago by zhaosu99
  0

• Provide Slurm cluster interface

  #11 opened 2 years ago by timtroendle
  1

• Add publication rule

  #12 opened 2 years ago by timtroendle
  0

• Add feather-to-csv and netcdf-to-csv util rules

  #10 opened 2 years ago by timtroendle
  0

• Make report optional

  #9 opened 2 years ago by timtroendle
  0

• Add automated reruns triggered by code/params/env changes

  #7 opened 2 years ago by timtroendle
  0

• Ensure minimal base env

  #8 opened 2 years ago by timtroendle
  0

• Update Snakemake (cluster) configuration

  #6 opened 2 years ago by timtroendle
  0

• Add euro-calliope template

  #4 opened 4 years ago by timtroendle
  0

• Add a default configuration file

  #2 opened 4 years ago by timtroendle
  0