Pinned Repositories
LDlinkR
LDlinkR
PCAmatchR
A flexible R package for weighted principal component case control matching
ATAC-seq
Basic workflow for ATAC-seq analysis
awesome-r-learning-resources
A curated collection of free resources to help deepen your understanding of the R programming language. Updated regularly. Contributions encouraged via pull request (see contributing.md).
awesome-r-pkgtools
A curated list of awesome tools for R package development
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
hicpro_hicdcplus_test
First test analysis of HiC-pro output data using HiCDCPlus
ImPRS
polygenic risk scores
ldlinkr
LDlinkR: An R package for calculating linkage disequilibrium in human populations of interest
r-learning-resources-for-genomics
A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.
timyers's Repositories
timyers/r-learning-resources-for-genomics
A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.
timyers/hicpro_hicdcplus_test
First test analysis of HiC-pro output data using HiCDCPlus
timyers/ATAC-seq
Basic workflow for ATAC-seq analysis
timyers/awesome-r-pkgtools
A curated list of awesome tools for R package development
timyers/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
timyers/ldlinkr
LDlinkR: An R package for calculating linkage disequilibrium in human populations of interest
timyers/biorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
timyers/Flowise
Drag & drop UI to build your customized LLM flow using LangchainJS
timyers/git-novice-fork
Version Control with Git
timyers/gpn
Genomic Pre-trained Network
timyers/gpt4-pdf-chatbot-langchain
GPT4 & LangChain Chatbot for large PDF docs
timyers/hex-stickers
RStudio hex stickers
timyers/HiC_tools
A collection of tools for Hi-C data analysis
timyers/kallistobustools
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
timyers/LDlinkR-1
LDlinkR
timyers/MotifFindR
Motif Analysis to Identify Putative Transcription Factor (TF) Binding Sites
timyers/on-books
Readings and notes on the past, present, and future of books
timyers/oneliners
Useful bash one-liners for bioinformatics.
timyers/oneliners-fork
One liners and useful scripts for computational biology
timyers/rap4all
timyers/rsFlankR
This R script retrieves upstream and downstream DNA flanking sequences for given rsIDs or a list of rsIDs. It utilizes online databases to download sequence data and miscellaneous data about the SNP.
timyers/rsnps
Wrapper to a number of SNP web APIs
timyers/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
timyers/scRNAseq_analysis_vignette
Tutorial for scRNA-seq data analysis beginners using R
timyers/targets
Function-oriented Make-like declarative workflows for R
timyers/the-art-of-command-line
Master the command line, in one page
timyers/the-turing-way
Host repository for The Turing Way: a how to guide for reproducible data science
timyers/Timverse
Meta package that installs my most commonly used packages
timyers/UpSetToolkit
Generate UpSet plots and clean data with utility scripts for RCC CRISPRi/a screening project
timyers/winterPlots