tjcreedy

Pinned Repositories

LearnMetabarcoding
Language:UnrealScript1 3 00
biotools
Standalone scripts that are useful for manipulating and analysing DNA sequence data
Language:Python3 3 04
constants
Static storage for useful data
0 3 00
genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
Language:Nextflow0 0 00
LearnMetabarcoding
Language:Python0 2 00
metamate
Your metabarcoding friend! Filter erroneous and unwanted amplicons.
Language:Python6 2 71
mitocorrect
Automatically correct your mitochondrial genome annotations using expert knowledge
Language:Python1 2 01
NAPtime
DEPRECATED [NAPtime: the NGS Amplicon Pipeline, perl wrapper scripts for amplicon barcoding and metabarcoding]
Language:Perl1 2 01
phylostuff
Standalone scripts for helping to build and work with phylogenies
Language:R3 2 11
pipelines
Bioinformatics pipelines in the Vogler Lab
2 2 04

tjcreedy's Repositories

tjcreedy/metamate
Your metabarcoding friend! Filter erroneous and unwanted amplicons.
Language:Python6 2 71
tjcreedy/biotools
Standalone scripts that are useful for manipulating and analysing DNA sequence data
Language:Python3 3 04
tjcreedy/phylostuff
Standalone scripts for helping to build and work with phylogenies
Language:R3 2 11
tjcreedy/pipelines
Bioinformatics pipelines in the Vogler Lab
2 2 04
tjcreedy/mitocorrect
Automatically correct your mitochondrial genome annotations using expert knowledge
Language:Python1 2 01
tjcreedy/NAPtime
DEPRECATED [NAPtime: the NGS Amplicon Pipeline, perl wrapper scripts for amplicon barcoding and metabarcoding]
Language:Perl1 2 01
tjcreedy/constants
Static storage for useful data
0 3 00
tjcreedy/genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
Language:Nextflow0 0 00
tjcreedy/LearnMetabarcoding
Language:Python0 2 00
tjcreedy/MMGscripts
A collection of scripts to facilitate MMG
Language:Perl2 1
tjcreedy/mtgendb
Language:Python1
tjcreedy/nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0
tjcreedy/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
Language:C
tjcreedy/recipes
Bored of coding but still love following instructions? Cook something delicious instead.
2 0
tjcreedy/SITE-100DB
scripts for managing the SITE-100 database
Language:R1 0
tjcreedy/tbaf-ml
Machine learning approach to translation-based amplicon filtering
Language:Python
tjcreedy/test-datasets
Test data to be used for automated testing with the nf-core pipelines
0 0