Pinned Repositories
LearnMetabarcoding
biotools
Standalone scripts that are useful for manipulating and analysing DNA sequence data
constants
Static storage for useful data
genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
LearnMetabarcoding
metamate
Your metabarcoding friend! Filter erroneous and unwanted amplicons.
mitocorrect
Automatically correct your mitochondrial genome annotations using expert knowledge
NAPtime
DEPRECATED [NAPtime: the NGS Amplicon Pipeline, perl wrapper scripts for amplicon barcoding and metabarcoding]
phylostuff
Standalone scripts for helping to build and work with phylogenies
pipelines
Bioinformatics pipelines in the Vogler Lab
tjcreedy's Repositories
tjcreedy/metamate
Your metabarcoding friend! Filter erroneous and unwanted amplicons.
tjcreedy/biotools
Standalone scripts that are useful for manipulating and analysing DNA sequence data
tjcreedy/phylostuff
Standalone scripts for helping to build and work with phylogenies
tjcreedy/pipelines
Bioinformatics pipelines in the Vogler Lab
tjcreedy/mitocorrect
Automatically correct your mitochondrial genome annotations using expert knowledge
tjcreedy/NAPtime
DEPRECATED [NAPtime: the NGS Amplicon Pipeline, perl wrapper scripts for amplicon barcoding and metabarcoding]
tjcreedy/constants
Static storage for useful data
tjcreedy/genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
tjcreedy/LearnMetabarcoding
tjcreedy/MMGscripts
A collection of scripts to facilitate MMG
tjcreedy/mtgendb
tjcreedy/nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
tjcreedy/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
tjcreedy/recipes
Bored of coding but still love following instructions? Cook something delicious instead.
tjcreedy/tbaf-ml
Machine learning approach to translation-based amplicon filtering
tjcreedy/test-datasets
Test data to be used for automated testing with the nf-core pipelines