Pinned Repositories
ngs-vm
Automation of the IT infrastructure for the NGS course
structural_variation
www.htslib.org
The http://www.htslib.org/ web site
assembly-eval
jobTree
Pipeline management software for clusters
ngs-vm
Automation of the IT infrastructure for the NGS course
RetroSeq
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.
tk2's Repositories
tk2/RetroSeq
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.
tk2/assembly-eval
tk2/jobTree
Pipeline management software for clusters
tk2/ngs-vm
Automation of the IT infrastructure for the NGS course