tkamath1

BilinearModels.jl

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bxtools

Tools for analyzing 10X genomics data

CancerFit

CITE-seq_Analysis

Code for using Drop-seq tools and a custom alignment script in order to quantify digital gene expression for an ADT 10X library. Geared for now towards lab-mates at the Broad Institute.

graphREML

hello-world

First repository

hgaprec

Algorithms for Bayesian Poisson factorization

Kamathetal2022

Code to reproduce analyses and figures for Kamath et al., 2022

lariat

Linked-Read Alignment Tool

tkamath1/Kamathetal2022

Code to reproduce analyses and figures for Kamath et al., 2022

tkamath1/hgaprec

Algorithms for Bayesian Poisson factorization

tkamath1/BilinearModels.jl

tkamath1/bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

tkamath1/bxtools

Tools for analyzing 10X genomics data

tkamath1/CancerFit

tkamath1/CITE-seq_Analysis

Code for using Drop-seq tools and a custom alignment script in order to quantify digital gene expression for an ADT 10X library. Geared for now towards lab-mates at the Broad Institute.

tkamath1/graphREML

tkamath1/hello-world

First repository

tkamath1/lariat

Linked-Read Alignment Tool

tkamath1/masc

MASC: Mixed-effects Association testing for Single Cells

tkamath1/Microbiology-Problem2

tkamath1/nirscoding

tkamath1/nloptr

nloptr provides an R interface to NLopt, a free/open-source library for nonlinear optimization providing a common interface to a number of different optimization routines which can handle nonlinear constraints and lower and upper bounds for the controls.

tkamath1/presto

Fast Wilcoxon and auROC

tkamath1/samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

tkamath1/sldp

Signed LD profile regression code

tkamath1/svaba

Structural variation and indel detection by local assembly

tkamath1/tkamath1.github.io