tmoerman
Full-stack Clojure, Python, data engineering, machine learning, bioinformatics.
Aspect Analytics, Polymath BVBelgium
Pinned Repositories
arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
adam-fx
An ADAM extension library for loading .vcf files annotated with SnpEff and SnpSift.
arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
brassica
fun_py
A short course on functional programming in Python using light-weight tools.
plongeur
It is the year 1958 and the French experimental nuclear submarine, Plongeur, has embarked on its maiden voyage.
rosalind
clojure implementations for Project Rosalind problems
sourire
A minimal web API rendering SMILES molecules
spark-neighbors
Spark-based approximate nearest neighbor search using locality-sensitive hashing
vcf-comp
VCF comparison utilities.
tmoerman's Repositories
tmoerman/sourire
A minimal web API rendering SMILES molecules
tmoerman/arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
tmoerman/fulcro-ci
A docker image based on Clojure with required dependencies to perform CI/CD builds for Fulcro apps.
tmoerman/fun_py
A short course on functional programming in Python using light-weight tools.
tmoerman/alois
ML-based exploration and analysis of AD-ST
tmoerman/anchor-py
See: http://people.csail.mit.edu/moitra/software.html
tmoerman/boruta_py
Python implementations of the Boruta all-relevant feature selection method.
tmoerman/dask-ml
Scalable Machine Learn with Dask
tmoerman/dinky
Dinky is a Jekyll theme for GitHub Pages
tmoerman/duct-ale
A Duct CLJ(S) exercise project.
tmoerman/fulcro-developer-guide
Fulcro 3 Developer's Guide. (See root of older fulcro repository for version 2)
tmoerman/hip-flask
a small Flask tryout app
tmoerman/ide-settings
Some setting for IntelliJ, Cursive, other tools.
tmoerman/karna
kernel embedding study
tmoerman/klsh
Python implementation of Kernelized Locality Sensitive Hashing
tmoerman/lathspell
Latent feature space extraction and visualization experiment for single-cell 'omics data
tmoerman/ngraph
Beautiful Graphs
tmoerman/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
tmoerman/python-allstars
A curated list of Python data science and machine learning resources
tmoerman/realworld-fulcro
A full stack implementation of RealWorld spec https://github.com/gothinkster/realworld/
tmoerman/scenic-on-ray
An attempt at implementing the pySCENIC (https://github.com/aertslab/pySCENIC) workflow on Ray (https://github.com/ray-project/ray)
tmoerman/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tmoerman/startbootstrap-creative
A one page HTML theme for creatives by Start Bootstrap
tmoerman/system
a dependency injection library for Clojure and ClojureScript 🍩
tmoerman/temporal-clojure-sdk
A Temporal SDK for Clojure
tmoerman/tmoerman.github.io
tmoerman github pages
tmoerman/tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
tmoerman/uncurl_python
UNCURL is a tool for single cell RNA-seq data analysis.
tmoerman/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
tmoerman/vizarr
A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.