toddknutson
I'm a bioinformatics analyst at the University of Minnesota!
University of MinnesotaMinneapolis, MN
Pinned Repositories
cephtools
Safely copy data from high performance storage (panfs) to object based storage (ceph)
genbank_scrapper
GenBank Metadata Extraction Tool
mdlvalr
Molecular Diagnostics Lab (MDL) clinical validation R package
modules_install_notes
Bash scripts for reproducible software installation as modules
software_tips
A collection of various software tips and tricks.
toddr
R package for RNAseq, scRNAseq, variant calling, and other bioinformatics methods used by Todd
toddknutson's Repositories
toddknutson/genbank_scrapper
GenBank Metadata Extraction Tool
toddknutson/2019Talks
2019 Speaker Materials
toddknutson/2020Talks
Speaker materials for 2020 conference
toddknutson/asciidoc-samples
A repository of AsciiDoc source files for testing AsciiDoc rendering on GitHub.
toddknutson/bbedit_codeless_language_module_R
BBEdit coddles language module for R
toddknutson/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
toddknutson/cephtools
Safely copy data from high performance storage (panfs) to object based storage (ceph)
toddknutson/mdlvalr
Molecular Diagnostics Lab (MDL) clinical validation R package
toddknutson/modules_install_notes
Bash scripts for reproducible software installation as modules
toddknutson/software_tips
A collection of various software tips and tricks.
toddknutson/toddr
R package for RNAseq, scRNAseq, variant calling, and other bioinformatics methods used by Todd
toddknutson/data_sharing_tips
The Leek group guide to data sharing
toddknutson/education_global_warming
Coursera: Data Analysis & Statistical Inference. Project using survey data.
toddknutson/most_costly_storms
Coursera: Reproducible Research. Identify the most costly storms in USA.
toddknutson/personal_activity_monitoring
Coursera: Reproducible Research. Discover patterns in daily activity.
toddknutson/plotting_in_R
Coursera: Exploratory Data Analysis. Basic plotting in R.
toddknutson/pollution_in_USA
Coursera: Exploratory Data Analysis. Explore fine particulate matter pollution in US cities.
toddknutson/predict_weightlifting_form
Coursera: Practical Machine Learning. Train learning algorithm to predict weightlifting form.
toddknutson/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
toddknutson/testing
toddknutson/tests-as-linear
Common statistical tests are linear models (or: how to teach stats)
toddknutson/toddknutson