Pinned Repositories
awesome-tensorflow
TensorFlow - A curated list of dedicated resources http://tensorflow.org
AZOrange
AstraZeneca add-ons to Orange.
AZOrange0.6.3
AZ Orange integrations
BHSC_Bio_data
Data for Bar Harbor Short Course
CaSpER
CNTK
Microsoft Cognition Toolkit (CNTK)
ConformalPrediction_PortAZ0.6
cytominer
Methods for Image-Based Cell Profiling
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
PhaseImpute
EXAMPLE CODE IMPUTATION WITH ONE PHASED REFERENCE PANEL FROM PLINK FILES
tojojames's Repositories
tojojames/PhaseImpute
EXAMPLE CODE IMPUTATION WITH ONE PHASED REFERENCE PANEL FROM PLINK FILES
tojojames/awesome-tensorflow
TensorFlow - A curated list of dedicated resources http://tensorflow.org
tojojames/AZOrange
AstraZeneca add-ons to Orange.
tojojames/AZOrange0.6.3
AZ Orange integrations
tojojames/BHSC_Bio_data
Data for Bar Harbor Short Course
tojojames/CaSpER
tojojames/CNTK
Microsoft Cognition Toolkit (CNTK)
tojojames/ConformalPrediction_PortAZ0.6
tojojames/cytominer
Methods for Image-Based Cell Profiling
tojojames/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
tojojames/Django-JS-Frontend-Integration
This tutorial shows you the basics of how to integrate Angular, React, Vue, or any other JavaScript front end you'd like.
tojojames/DrugTargetProfiler
Drug Target Profiler(DTP) is an interactive web-application for drug-target interaction network visualization, implemented for guiding drug re-purposing and drug mode of action studies. The user-specified network is constructed based on integrated bioactivity data, namely dose-response measurements (IC50, EC50, XC50, AC50, Kd, Ki). After entering the names of compounds or proteins of interest (both wildtype and mutant targets), DTP generates an interactive network layout with multiple visualization options for the user. A combined network visualization can be made for a maximum of 10 search entries. Users may also upload their own interaction data and make customized visualizations for compounds and targets beyond those that are available in the DTP database.The public version of web application (https://drugtargetprofiler.fimm.fi/) is developed using Django framework.
tojojames/gitignore
A collection of useful .gitignore templates
tojojames/hops
Hops Hadoop is a distribution of Apache Hadoop with distributed metadata.
tojojames/lectures-labs
Slides and Jupyter notebooks for the Deep Learning lectures at M2 Data Science Université Paris Saclay
tojojames/mhcPreds
MHC-antigen affinity prediction using TensorFlow.
tojojames/MVCP-Orange3
Conformal Preditction methods add-on to Orange 3.0 library
tojojames/orange3
Orange 3 data mining suite: http://orange.biolab.si
tojojames/PISCES
R package for Protein activity analysis of single-cell RNAseq.
tojojames/plink2R
Read PLINK BED/BIM/FAM files into R
tojojames/single-cell-pipeline
tojojames/single-cell-viewer
R package to visualize scRNA sequencing data.
tojojames/SnpEff
tojojames/stardist
StarDist - Object Detection with Star-convex Shapes
tojojames/tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
tojojames/tensorflow
Computation using data flow graphs for scalable machine learning
tojojames/testresp
tojojames/VCF-Simplify
A python parser to simplify and build the VCF (Variant Call Format).
tojojames/Viberr
Viberr is an application that let's you upload, store, and play all of your music from the cloud.