tokami
I am interested in the processes governing the stability, diversity and productivity of marine fish communities and their implication on sustainable management.
@DTUAqua Copenhagen
Pinned Repositories
apps
datalimited
Stock assessment methods for data-limited fisheries
DATRAS
DelayDifference
A C++ implementation of the Schnute-Deriso delay difference model
fishdish
Fish distribution stuff
gadget
Gadget is the Globally applicable Area Disaggregated General Ecosystem Toolbox
iamse
lbmsmt
This repository collects functions for the integration of length-based methods (lbms) into FAO's stock monitoring tool (smt).
spict
Surplus Production in Continuous-Time
TropFishR
Tropical Fisheries Analysis with R
tokami's Repositories
tokami/TropFishR
Tropical Fisheries Analysis with R
tokami/fishdish
Fish distribution stuff
tokami/gadget
Gadget is the Globally applicable Area Disaggregated General Ecosystem Toolbox
tokami/iamse
tokami/lbmsmt
This repository collects functions for the integration of length-based methods (lbms) into FAO's stock monitoring tool (smt).
tokami/spict
Surplus Production in Continuous-Time
tokami/apps
tokami/datalimited
Stock assessment methods for data-limited fisheries
tokami/DATRAS
tokami/DelayDifference
A C++ implementation of the Schnute-Deriso delay difference model
tokami/fishdynr
R package of fisheries science related population dynamics models
tokami/FLXSA
The FLXSA package
tokami/hpc_setup
tokami/ICES_MSY
ICES methods for setting proxy MSY reference points for stocks in categories 3 and 4
tokami/icesDatras
R interface to DATRAS trawl database web services
tokami/Jodari
Length-frequency data of the driftnet fisheries in Zanzibar, Tanzania.
tokami/latex-yearly-planner
Digital planner for Supernote and ReMarkable // Support Ukraine 🇺🇦 https://savelife.in.ua/en
tokami/LBSPR
Length Based SPR Code
tokami/LFEM
A new methodology for length frequency analysis
tokami/prodmse
Management Strategy Evaluation (MSE) with production operating models
tokami/pubs
supporting information and material for my publications
tokami/s6model
Data-poor fish stock assessment using the single species, size structured, steady state model
tokami/SAM
Git page for SAM R-package
tokami/SensitiveDemSpecies
Extending the analysis on sensitive species developed by Rindorf et al., (accepted, Journal of Applied Ecology) Are fish sensitive to trawling recovering in the Northeast Atlantic?
tokami/sinkr
A collection of functions with emphasis on multivariate methods and handling of geographic datasets
tokami/smt-shiny
tokami/spictsim
tokami/StockMonitoringTool
tokami/surveyIndex
R package for calculating survey indices by age from DATRAS exchange data
tokami/TropFishR.select
Selectivity explorations of single-species fish stock assessments in a data-poor context.