tolkit/gfatk

Issues

• Format GFA to be compatible with gfatk

  #12 opened 5 months ago by Euphrasiologist
  0

• Allow any name for GFA segments, lines, paths etc.

  #15 opened 5 months ago by Euphrasiologist
  0

• Hashmap for NodeIndex <-> segment ID

  #16 opened 2 years ago by ASLeonard
  1

• Obtain path sequences as specified in P-lines

  #14 opened 2 years ago by dirkjanvw
  11

• Add upper node number limit to `gfatk linear`

  #10 opened 2 years ago by Euphrasiologist
  0

• gfatk linear usage questions

  #13 opened 2 years ago by Orz-CQ
  4

• `gfatk linear -ei` bug

  #9 opened 3 years ago by Euphrasiologist
  1

• Restrict linear based on node number

  #7 opened 3 years ago by Euphrasiologist
  0

• Extract a BED file of the joined coordinates in `gfatk linear`

  #8 opened 3 years ago by Euphrasiologist
  0

• Extract multiple mito contigs

  #6 opened 3 years ago by Euphrasiologist
  1

• Make `gfatk extract` be able to take more than one seg ID

  #5 opened 3 years ago by Euphrasiologist
  0

• Add `gfatk extract-chloro` command

  #4 opened 3 years ago by Euphrasiologist
  0

• Allow user supplied path in `gfatk linear`

  #3 opened 3 years ago by Euphrasiologist
  0

• Remove redundancy from end of last joined contig

  #2 opened 3 years ago by Euphrasiologist
  1

• `gfatk linear` should linearise within subgraphs

  #1 opened 3 years ago by Euphrasiologist
  0