Pinned Repositories
BrainRender
a python based software for visualization of neuroanatomical and morphological data.
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CalciumImagingSet
Collected Scripts for CalciumImaging added to a gui
CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
citation-finder-pubmed
Turns free-text citations into PubMed articles
lipidcreator
LipidCreator is a powerful stand alone kick-off tool for targeted lipidomics and a plugin for Skyline. It provides convenient tools to generate transition lists for labeled and unlabeled lipids.
micropython
Port of MicroPython for the BBC micro:bit
NanoCamera
A simple to use camera interface for the Jetson Nano for working with USB and CSI cameras in Python.
nltools
Python toolbox for analyzing imaging data
suite2p
cell detection in calcium imaging recordings
tomMEM's Repositories
tomMEM/BrainRender
a python based software for visualization of neuroanatomical and morphological data.
tomMEM/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
tomMEM/CalciumImagingSet
Collected Scripts for CalciumImaging added to a gui
tomMEM/CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
tomMEM/citation-finder-pubmed
Turns free-text citations into PubMed articles
tomMEM/lipidcreator
LipidCreator is a powerful stand alone kick-off tool for targeted lipidomics and a plugin for Skyline. It provides convenient tools to generate transition lists for labeled and unlabeled lipids.
tomMEM/micropython
Port of MicroPython for the BBC micro:bit
tomMEM/NanoCamera
A simple to use camera interface for the Jetson Nano for working with USB and CSI cameras in Python.
tomMEM/nltools
Python toolbox for analyzing imaging data
tomMEM/suite2p
cell detection in calcium imaging recordings
tomMEM/Weather_data
Time-series of Local Weather Data
tomMEM/ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy