tomazc/iCount

Issues

• Add man command script to generate manual for CLI

  #70 opened 8 years ago
  0

• Consistent multi-line constructs

  #64 opened 8 years ago
  0

• peaks, get_genes: group annotation by gene_id

  #60 opened 8 years ago
  0

• Make repo public

  #59 opened 8 years ago
  0

• Add tox

  #58 opened 8 years ago
  0

• Add documentation

  #57 opened 8 years ago
  1

• Error and exception handling in CLI and python functions

  #52 opened 8 years ago
  1

• Implement exampledata command

  #48 opened 8 years ago
  0

• Add logging functionality

  #46 opened 8 years ago
  0

• Clean up CLI and module interface(s)

  #45 opened 8 years ago
  0

• Improve codecov coverage

  #40 opened 8 years ago
  0

• Add clustering step

  #22 opened 8 years ago
  0

• Add RNA maps analysis

  #21 opened 7 years ago
  1

• Add kmer enrichment analysis

  #20 opened 8 years ago
  0

• Add faster peak analysis

  #19 opened 8 years ago
  0

• Add grouping of bedGraphs

  #18 opened 8 years ago
  0

• Add summary report step

  #17 opened 8 years ago
  1

• Add annotation step

  #16 opened 8 years ago
  1

• Add filter step

  #15 opened 5 years ago
  1

• Add bam2bed step

  #14 opened 8 years ago
  0

• Add mapping step

  #13 opened 8 years ago
  0

• Add genome index generation step

  #12 opened 8 years ago
  0

• Add demultiplexing step

  #11 opened 8 years ago
  0

• Segment genome into RNA subtypes

  #10 opened 8 years ago
  0

• Segment genome into exons, introns, utrs, CDS, ncRNA, intergenic

  #9 opened 8 years ago
  0

• Obtain iCLIP data from archives (ENA, ENCODE, any URL, ...)

  #8 opened 8 years ago
  1

• Add regression test for entire pipeline

  #7 opened 8 years ago
  0

• Add regression test for iCount.genomes.segment.get_genes

  #6 opened 8 years ago
  0