Issues
- 0
Could iCount xlsites support soft-clipping?
#215 opened by TomSmithCGAT - 0
AssertionError : assert current_gene not in gene_ids
#214 opened by mohamedbahru - 0
- 1
Help with installation
#212 opened by valerieT1998 - 0
permutation test for multi-mapped reads
#211 opened by HibaLaghrissi - 2
Setup fails with pip install
#199 opened by SamBryce-Smith - 0
How to cite update
#210 opened by michaelmhoffman - 0
- 0
iCount demultiplex --minimum_length cannot work
#207 opened by wjzhangiris - 0
issue with indexstar
#206 opened by vd77 - 2
- 5
Clusters command generates empty file
#202 opened by JulieCremaschi - 2
iCount clusters: error
#201 opened by tianxiahuihui - 2
Error in generating segments
#200 opened by garimak05 - 3
Suggest: '--genomeLoad', 'LoadAndRemove' for STAR
#169 opened by bakerwm - 2
Question: iCount xlsites expected runtime
#191 opened by mirax87 - 3
iCount clusters fails to predict clusters with bedtools 2.27 - no error or warning
#174 opened by mirax87 - 1
segment:error in gene level segmentation
#186 opened by snk9987 - 2
SyntaxError Invalid syntax
#183 opened by krutru - 2
[E::bgzf_flush] File write failed (wrong size)
#180 opened by sarahbonnin - 2
- 4
- 6
Error while running iCount peaks
#164 opened by raflynn - 1
Definitions from 'summary' tool
#158 opened by raflynn - 0
Memory Issue - Running 'peaks' tool
#157 opened by raflynn - 2
installation
#155 opened by raflynn - 0
publish on PyPI
#120 opened by tomazc - 0
- 0
iCount demultiplex does not put random barcodes in headers of demultiplexed fastqs
#140 opened by JureZmrzlikar - 5
Support Prokaryotic Genomes
#139 opened by Faitero - 7
segment: Add suport for GENCODE annotation
#125 opened by tomazc - 2
iCount mapstar do not accept "--runThreadN" comand
#131 opened by Faitero - 0
Support custom arguments in mapstar and indexstar
#134 opened by JureZmrzlikar - 4
Problems connecting to ENSEMBL FTP server
#130 opened by Faitero - 2
- 1
genome: Specify chromosome
#123 opened by Faitero - 0
clusters: Output issue
#126 opened by nebo56 - 1
STAR index
#127 opened by Faitero - 1
species: Retrieval of species release
#121 opened by Faitero - 2
peaks: [OSError] 28
#124 opened by nebo56 - 0
Fix linter issues
#72 opened by JureZmrzlikar - 0
Multiline descriptions of parameters
#111 opened by tomazc - 0
Error handling in ensembl
#112 opened by tomazc - 1
- 0
Simplify versioning in setup.py
#98 opened by tomazc - 1
summary: add "unannotated" category
#105 opened by JureZmrzlikar - 1
Consistent naming of arguments in (CLI) functions
#76 opened by tomazc - 2
Short names of CLI commands
#77 opened by tomazc - 0
Pretty print CLI help
#86 opened by JureZmrzlikar - 1
Autocomplete
#73 opened by JureZmrzlikar