Pinned Repositories
2016-Code-Bioinfo
Binformatics and IT
4p
Parallel Processing of Polymorphism Panels
Ath_Heat_Hi-C
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
faang-methylation
This repo is to collect the FAANG methylation group's code and pipelines
labs
Rmd source files for the HarvardX series PH525x
p4-phylogenetics
Automatically exported from code.google.com/p/p4-phylogenetics
Q_lncRNA_analysis
speedseq
A flexible framework for rapid genome analysis and interpretation
TEanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
Variant_Calling_Pipeline
It is used to call SNP and INDEL in the data from RICE.
Linhua-Sun's Repositories
Linhua-Sun/Ath_Heat_Hi-C
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
Linhua-Sun/faang-methylation
This repo is to collect the FAANG methylation group's code and pipelines
Linhua-Sun/Q_lncRNA_analysis
Linhua-Sun/TEanalysis
Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
Linhua-Sun/A_thaliana_epigenetic_mutants
Linhua-Sun/bamTobw
Convert BAM files to bigWig files with a simple command
Linhua-Sun/cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
Linhua-Sun/CLS_Sever_Code
Linhua-Sun/FEELnc
FlExible Extraction of LncRNA
Linhua-Sun/formattable
Formattable Data Structures
Linhua-Sun/git_test
Linhua-Sun/jbrowse
A modern genome browser built with JavaScript and HTML5.
Linhua-Sun/Linhua-Sun.github.io
Webpage for Linhua Sun.
Linhua-Sun/local_pca
Methods for examining PCA locally along the genome.
Linhua-Sun/METACLUSTER
R package for context-specific functionality analysis of metabolic gene clusters
Linhua-Sun/paratext
A library for reading text files over multiple cores.
Linhua-Sun/PB
Linhua-Sun/PB_CLS
Test on the phylogenomics of yeast
Linhua-Sun/Population_Genetics
Start to Test Pop gen on BIG DATA
Linhua-Sun/QIANLAB
SCRIPTS about analysis in QIANLAB
Linhua-Sun/R-in-Centos-7
Use R!
Linhua-Sun/resequecning_data_process
Linhua-Sun/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Linhua-Sun/smcpp
SMC++ infers population history from whole-genome sequence data.
Linhua-Sun/SVPV
Structural Variant Prediction Viewer
Linhua-Sun/telescope
Quantification of transposable element expression using RNA-seq
Linhua-Sun/test_circos
Linhua-Sun/the-art-of-command-line
Master the command line, in one page
Linhua-Sun/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Linhua-Sun/ViewBS
ViewBS - Tools for exploring and visualizing bisulfite sequencing (BS-seq) data.